FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11142-RB through 18771 annotations produced 1 hits

CG11142 (obst-E):

Annotation Number : CG11142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031737
Gbrowse : chr2L:5762673-5766141 (-) // 100.0 //
Probeset : 1628498_at
Accessions : protein= NP_608957; /// NP_723116;, nucleotide= NM_135113; /// NM_164659;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0031737.
BioGrid reports that CG11142 interacts with CG1391 CG2522 CG31111 CG1133 .
VDRC has 1 RNAi stocks for FBgn0031737 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 3	1 of 4	0.30	Down
Head	119 ± 7	4 of 4	3.00	Up
Eye	137 ± 5	4 of 4	3.48	Up
Thoracicoabdominal ganglion	11 ± 1	1 of 4	0.30	Down
Salivary gland	28 ± 1	0 of 4	0.72	None
Crop	294 ± 5	4 of 4	7.50	Up
Midgut	28 ± 4	0 of 4	0.70	None
Tubule	13 ± 2	0 of 4	0.30	Down
Hindgut	183 ± 12	4 of 4	4.70	Up
Heart	8 ± 2	0 of 4	0.22	Down
Fat body	19 ± 12	0 of 4	0.48	Down
Ovary	9 ± 1	0 of 4	0.20	Down
Testis	7 ± 1	0 of 4	0.20	Down
Male accessory glands	14 ± 2	1 of 4	0.40	Down
Virgin spermatheca	23 ± 1	0 of 4	0.60	Down
Mated spermatheca	24 ± 4	0 of 4	0.62	None
Adult carcass	89 ± 5	4 of 4	2.30	Up
Larval CNS	7 ± 1	1 of 4	0.20	Down
Larval Salivary gland	19 ± 2	1 of 4	0.48	Down
Larval midgut	9 ± 1	0 of 4	0.23	Down
Larval tubule	10 ± 2	0 of 4	0.30	Down
Larval hindgut	235 ± 29	4 of 4	5.97	Up
Larval fat body	15 ± 5	0 of 4	0.40	Down
Larval trachea	251 ± 40	4 of 4	6.38	Up
Larval carcass	1515 ± 296	4 of 4	38.48	Up
S2 cells (growing)	19 ± 1	1 of 4	0.49	Down
Whole fly	39 ± 4	4 of 4

Looking for CG11142-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720