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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1115-RA through 18771 annotations produced 1 hits



(CG1115):

Annotation Number : CG1115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037299
Gbrowse : chr3R:1051881-1053248 (+) // 100.0 //
Probeset : 1636038_at
Accessions : protein= NP_649518;, nucleotide= NM_141261;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037299.
BDGP gene expression has embryonic in situ data for CG1115: 4 pix of staining in 1 body parts.
BioGrid reports that CG1115 interacts with CG15676 CG1638 CG4443 CG9712 CG2099 CG4303 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain207 64 of 4 1.30Up
Head183 124 of 4 1.10None
Eye227 104 of 4 1.40Up
Thoracicoabdominal ganglion205 114 of 4 1.30Up
Salivary gland248 114 of 4 1.53Up
Crop262 74 of 4 1.60Up
Midgut259 154 of 4 1.60Up
Tubule160 54 of 4 1.00None
Hindgut214 74 of 4 1.30Up
Heart237 74 of 4 1.47Up
Fat body186 114 of 4 1.15Up
Ovary173 44 of 4 1.10None
Testis101 34 of 4 0.60Down
Male accessory glands259 84 of 4 1.60Up
Virgin spermatheca174 104 of 4 1.08None
Mated spermatheca166 124 of 4 1.03None
Adult carcass212 44 of 4 1.30Up
Larval CNS223 174 of 4 1.38Up
Larval Salivary gland229 64 of 4 1.41Up
Larval midgut250 174 of 4 1.54Up
Larval tubule320 64 of 4 2.00Up
Larval hindgut184 124 of 4 1.14None
Larval fat body246 224 of 4 1.50Up
Larval trachea294 384 of 4 1.82Up
Larval carcass163 124 of 4 1.00None
S2 cells (growing)340 14 of 4 2.10Up
Whole fly162 54 of 4

Looking for CG1115-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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