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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11152-RA through 18771 annotations produced 1 hits



forkhead domain 102C (fd102C):

Annotation Number : CG11152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039937
Gbrowse : chr4:857834-859634 (-) // 100.0 //
Probeset : 1634589_at
Accessions : protein= NP_651951;, nucleotide= NM_143694;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0039937.
Homophila reports that CG11152 is a close match (9e-11) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683697), a gene associated with Speech-language disorder-1, 602081 (3).
VDRC has 1 RNAi stocks for FBgn0039937 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 34 of 442.20Up
Head10 10 of 4 9.70Up
Eye1 00 of 4 1.02None
Thoracicoabdominal ganglion0 00 of 4 0.60None
Salivary gland7 20 of 4 6.56None
Crop1 00 of 4 1.10None
Midgut1 00 of 4 1.20None
Tubule2 00 of 4 2.60Up
Hindgut1 00 of 4 1.20None
Heart0 00 of 4 0.91None
Fat body2 20 of 4 2.63None
Ovary0 00 of 4 0.70None
Testis5 10 of 4 5.10None
Male accessory glands3 10 of 4 3.00None
Virgin spermatheca2 00 of 4 1.91None
Mated spermatheca5 10 of 4 4.74None
Adult carcass0 00 of 4 0.80None
Larval CNS39 44 of 436.40Up
Larval Salivary gland0 00 of 4 0.58None
Larval midgut0 00 of 4 0.72None
Larval tubule0 00 of 4 0.60Down
Larval hindgut3 10 of 4 2.98None
Larval fat body1 00 of 4 1.00None
Larval trachea0 00 of 4 0.67None
Larval carcass2 10 of 4 2.12None
S2 cells (growing)1 10 of 4 1.51None
Whole fly1 00 of 4

Looking for CG11152-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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