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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11155-RA through 18771 annotations produced 1 hits



(CG11155):

Annotation Number : CG11155
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039927
Gbrowse : chr4:1150213-1157702 (+) // 100.0 //
Probeset : 1626426_at
Accessions : protein= NP_651941; /// NP_726648; /// NP_726649;, nucleotide= NM_143684; /// NM_166824; /// NM_166825;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0039927.
Homophila reports that CG11155 is a close match (2e-43) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 1 RNAi stocks for FBgn0039927 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039927 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 ± 14 of 4 8.80Up
Head34 ± 14 of 4 2.60Up
Eye87 ± 74 of 4 6.51Up
Thoracicoabdominal ganglion103 ± 34 of 4 7.70Up
Salivary gland16 ± 31 of 4 1.25None
Crop31 ± 14 of 4 2.30Up
Midgut18 ± 23 of 4 1.30None
Tubule32 ± 13 of 4 2.40Up
Hindgut17 ± 13 of 4 1.30None
Heart28 ± 14 of 4 2.12Up
Fat body10 ± 03 of 4 0.76None
Ovary6 ± 13 of 4 0.50Down
Testis8 ± 03 of 4 0.70None
Male accessory glands28 ± 34 of 4 2.20Up
Virgin spermatheca13 ± 23 of 4 1.04None
Mated spermatheca11 ± 12 of 4 0.86None
Adult carcass20 ± 32 of 4 1.50None
Larval CNS78 ± 84 of 4 5.87Up
Larval Salivary gland9 ± 11 of 4 0.72None
Larval midgut22 ± 03 of 4 1.64Up
Larval tubule23 ± 62 of 4 1.80None
Larval hindgut20 ± 14 of 4 1.51Up
Larval fat body5 ± 00 of 4 0.40Down
Larval trachea19 ± 53 of 4 1.46None
Larval carcass33 ± 14 of 4 2.47Up
S2 cells (growing)3 ± 10 of 4 0.23Down
Whole fly13 ± 24 of 4

Looking for CG11155-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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