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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11160-RB through 18771 annotations produced 1 hits



(CG11160):

Annotation Number : CG11160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030257
Gbrowse : chrX:10938790-10943578 (+) // 100.0 //
Probeset : 1634842_a_at
Accessions : protein= NP_572675; /// NP_727478;, nucleotide= NM_132447; /// NM_167262;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0016564 // transcription repressor activity // inferred from direct assay
FlyMine data for FBgn0030257.
BDGP gene expression has embryonic in situ data for CG11160: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.50None
Head16 20 of 4 0.90None
Eye4 10 of 4 0.23Down
Thoracicoabdominal ganglion16 20 of 4 0.90None
Salivary gland1 00 of 4 0.05Down
Crop177 84 of 4 9.70Up
Midgut2 10 of 4 0.10Down
Tubule0 00 of 4 0.00Down
Hindgut55 24 of 4 3.10Up
Heart68 44 of 4 3.74Up
Fat body1 00 of 4 0.06Down
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands5 20 of 4 0.30Down
Virgin spermatheca1 00 of 4 0.05Down
Mated spermatheca1 00 of 4 0.06Down
Adult carcass65 64 of 4 3.60Up
Larval CNS51 114 of 4 2.80Up
Larval Salivary gland0 00 of 4 0.05Down
Larval midgut0 00 of 4 0.04Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut34 32 of 4 1.88Up
Larval fat body0 00 of 4 0.00Down
Larval trachea1 00 of 4 0.07Down
Larval carcass75 133 of 4 4.10Up
S2 cells (growing)0 00 of 4 0.03Down
Whole fly18 31 of 4

Looking for CG11160-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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