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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11164-RA through 18771 annotations produced 1 hits



(CG11164):

Annotation Number : CG11164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030507
Gbrowse : chrX:13562055-13563328 (+) // 100.0 //
Probeset : 1632747_at
Accessions : protein= NP_572908;, nucleotide= NM_132680;
Pathway : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0030507.
BDGP gene expression has embryonic in situ data for CG11164: 15 pix of staining in 18 body parts.
Homophila reports that CG11164 is a close match (6e-18) to human gene (NP_078846), a gene associated with .
BioGrid reports that CG11164 interacts with CG8426 CG11173 CG11322 CG11331 CG11347 CG11607 CG11656 CG11761 CG11892 CG11893 CG12114 CG12126 CG12399 CG12985 CG13224 CG13317 CG1363 CG13687 CG14512 CG14566 CG1467 CG14692 CG1474 CG14806 CG15126 CG15167 CG15180 CG15528 CG15646 CG15669 CG15741 CG16790 CG17107 CG17153 CG4711 CG17769 CG17776 CG1836 CG1888 CG2079 CG2194 CG2851 CG2984 CG30092 CG31122 CG31211 CG31247 CG32206 CG12022 CG32491 CG32772 CG32809 CG33017 CG3342 CG3421 CG3647 CG3918 CG4057 CG4071 CG4634 CG4755 CG4968 CG5094 CG5149 CG5199 CG5383 CG5430 CG5446 CG5984 CG6338 CG6353 CG6378 CG6380 CG6393 CG6416 CG6485 CG6660 CG6664 CG6808 CG6843 CG7054 CG7056 CG7196 CG7715 CG7786 CG7856 CG7919 CG7974 CG8357 CG8386 CG8786 CG8841 CG8857 CG9188 CG9192 CG9212 CG9238 CG9310 CG9784 CG9797 CG17161 Dmel CR14499 Dmel CG14425 CG5829 .
VDRC has 2 RNAi stocks for FBgn0030507 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 33 of 4 0.10Down
Head8 ± 10 of 4 0.10Down
Eye17 ± 22 of 4 0.16Down
Thoracicoabdominal ganglion16 ± 22 of 4 0.10Down
Salivary gland11 ± 50 of 4 0.11Down
Crop29 ± 04 of 4 0.30Down
Midgut26 ± 41 of 4 0.20Down
Tubule6 ± 20 of 4 0.10Down
Hindgut13 ± 10 of 4 0.10Down
Heart8 ± 11 of 4 0.08Down
Fat body10 ± 30 of 4 0.09Down
Ovary242 ± 64 of 4 2.20Up
Testis11 ± 12 of 4 0.10Down
Male accessory glands16 ± 10 of 4 0.20Down
Virgin spermatheca6 ± 30 of 4 0.06Down
Mated spermatheca6 ± 20 of 4 0.06Down
Adult carcass13 ± 30 of 4 0.10Down
Larval CNS66 ± 54 of 4 0.62Down
Larval Salivary gland51 ± 04 of 4 0.47Down
Larval midgut27 ± 24 of 4 0.26Down
Larval tubule13 ± 12 of 4 0.10Down
Larval hindgut21 ± 34 of 4 0.19Down
Larval fat body15 ± 30 of 4 0.10Down
Larval trachea55 ± 94 of 4 0.52Down
Larval carcass30 ± 12 of 4 0.28Down
S2 cells (growing)47 ± 24 of 4 0.44Down
Whole fly108 ± 44 of 4

Looking for CG11164-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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