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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11165-RA through 18771 annotations produced 1 hits



(CG11165):

Annotation Number : CG11165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033238
Gbrowse : chr2R:3837343-3837970 (+) // 97.21 //
Probeset : 1628186_at
Accessions : protein= NP_610336;, nucleotide= NM_136492;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0033238.
BDGP gene expression has embryonic in situ data for CG11165: 4 pix of staining in 1 body parts.
Homophila reports that CG11165 is a close match (1e-14) to human gene CABP4;CSNB2B (NP_660201), a gene associated with Night blindness, congenital stationary, type 2B, 610427 (3).
BioGrid reports that CG11165 interacts with CG13701 CG12470 CG13458 CG3924 .
VDRC has 2 RNAi stocks for FBgn0033238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland17 ± 80 of 4 0.23Down
Crop7 ± 40 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule9 ± 11 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body42 ± 343 of 4 0.54None
Ovary0 ± 00 of 4 0.00Down
Testis1009 ± 64 of 412.90Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca47 ± 44 of 4 0.61Down
Mated spermatheca48 ± 173 of 4 0.62None
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS45 ± 283 of 4 0.58None
Larval Salivary gland6 ± 11 of 4 0.09Down
Larval midgut8 ± 00 of 4 0.10Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut11 ± 30 of 4 0.15Down
Larval fat body71 ± 423 of 4 0.90None
Larval trachea5 ± 60 of 4 0.06Down
Larval carcass3 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly78 ± 24 of 4

Looking for CG11165-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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