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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11169-RA through 18771 annotations produced 1 hits



Dlg-interacting metalloprotease (CG9850):

Annotation Number : CG11169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034903
Gbrowse : chr2R:19673371-19685110 (-) // 100.0 //
Probeset : 1631220_at
Accessions : protein= NP_001027572; /// NP_001137746; /// NP_611827;, nucleotide= NM_001032400; /// NM_001144274; /// NM_137983;
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferr
FlyMine data for FBgn0034903.
BDGP gene expression has embryonic in situ data for CG9850: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head2 ± 10 of 4 0.30Down
Eye2 ± 00 of 4 0.36Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.30Down
Salivary gland7 ± 40 of 4 1.05None
Crop5 ± 20 of 4 0.70None
Midgut2 ± 00 of 4 0.30Down
Tubule0 ± 00 of 4 0.10Down
Hindgut6 ± 00 of 4 0.90None
Heart1 ± 00 of 4 0.23Down
Fat body3 ± 20 of 4 0.47None
Ovary3 ± 00 of 4 0.40None
Testis2 ± 00 of 4 0.30Down
Male accessory glands4 ± 20 of 4 0.60None
Virgin spermatheca2 ± 10 of 4 0.30Down
Mated spermatheca3 ± 00 of 4 0.45None
Adult carcass2 ± 00 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.39None
Larval Salivary gland10 ± 31 of 4 1.34None
Larval midgut2 ± 10 of 4 0.33Down
Larval tubule3 ± 00 of 4 0.50None
Larval hindgut13 ± 20 of 4 1.74None
Larval fat body8 ± 20 of 4 1.10None
Larval trachea8 ± 20 of 4 1.17None
Larval carcass43 ± 181 of 4 5.81None
S2 cells (growing)2 ± 00 of 4 0.33Down
Whole fly7 ± 10 of 4

Looking for CG11169-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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