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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11172-RA through 18771 annotations produced 1 hits



Misexpression Suppressor of Ras 1 (NFAT):

Annotation Number : CG11172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030505
Gbrowse : chrX:13518789-13557690 (+) // 100.0 //
Probeset : 1632922_at
Accessions : protein= NP_001096974; /// NP_001162745; /// NP_001162746; /// NP_001162747; /// NP_511147;, nucleotide= NM_001103504; /// NM_001169274; /// NM_001169275; /// NM_001169276; /// NM_078592;
Pathway : DNA-dependent // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from mutant phe
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0030505.
BDGP gene expression has embryonic in situ data for NFAT: 13 pix of staining in 6 body parts.
BioGrid reports that CG11172 interacts with CG3353 CG3880 CG3978 CG3978 CG9375 CG3938 .
TRiP has 1 RNAi stocks for FBgn0030505 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030505 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 ± 64 of 4 2.00Up
Head19 ± 04 of 4 1.10None
Eye14 ± 04 of 4 0.78None
Thoracicoabdominal ganglion20 ± 14 of 4 1.10None
Salivary gland22 ± 23 of 4 1.26None
Crop21 ± 34 of 4 1.20None
Midgut9 ± 13 of 4 0.50Down
Tubule24 ± 14 of 4 1.40Up
Hindgut16 ± 14 of 4 0.90None
Heart11 ± 13 of 4 0.66None
Fat body39 ± 54 of 4 2.23Up
Ovary26 ± 34 of 4 1.50None
Testis9 ± 14 of 4 0.50None
Male accessory glands23 ± 24 of 4 1.30None
Virgin spermatheca17 ± 24 of 4 0.99None
Mated spermatheca20 ± 24 of 4 1.16None
Adult carcass28 ± 24 of 4 1.60Up
Larval CNS24 ± 84 of 4 1.40None
Larval Salivary gland32 ± 64 of 4 1.82None
Larval midgut16 ± 14 of 4 0.93None
Larval tubule37 ± 34 of 4 2.10Up
Larval hindgut75 ± 74 of 4 4.21Up
Larval fat body44 ± 54 of 4 2.50Up
Larval trachea18 ± 44 of 4 1.01None
Larval carcass19 ± 14 of 4 1.10None
S2 cells (growing)25 ± 24 of 4 1.40None
Whole fly17 ± 24 of 4

Looking for CG11172-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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