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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11181-RA through 18771 annotations produced 1 hits



cup (cup):

Annotation Number : CG11181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000392
Gbrowse : chr2L:6663964-6674790 (+) // 100.0 //
Probeset : 1633092_at
Accessions : protein= NP_523493;, nucleotide= NM_078769;
Pathway : 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005641 // nuclear envelope lumen // infer
Interpro : 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interactio
FlyMine data for FBgn0000392.
BDGP gene expression has embryonic in situ data for cup: 16 pix of staining in 5 body parts.
BioGrid reports that CG11181 interacts with CG32859 CG4916 CG11489 CG14540 CG15771 CG1841 CG2865 CG2944 CG40045 CG4264 CG4394 CG4863 CG5274 CG7434 CG7911 CG8677 CG8808 CG9163 CG9412 CG5637 CG12743 CG12743 CG18140 CG4035 CG4035 CG5637 .
TRiP has 2 RNAi stocks for FBgn0000392 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain200 ± 44 of 4 0.20Down
Head180 ± 84 of 4 0.20Down
Eye176 ± 104 of 4 0.20Down
Thoracicoabdominal ganglion239 ± 84 of 4 0.30Down
Salivary gland159 ± 64 of 4 0.18Down
Crop230 ± 44 of 4 0.30Down
Midgut188 ± 74 of 4 0.20Down
Tubule425 ± 94 of 4 0.50Down
Hindgut248 ± 34 of 4 0.30Down
Heart339 ± 144 of 4 0.39Down
Fat body283 ± 104 of 4 0.33Down
Ovary1479 ± 54 of 4 1.70Up
Testis1515 ± 304 of 4 1.70Up
Male accessory glands197 ± 34 of 4 0.20Down
Virgin spermatheca152 ± 44 of 4 0.18Down
Mated spermatheca181 ± 144 of 4 0.21Down
Adult carcass233 ± 94 of 4 0.30Down
Larval CNS284 ± 104 of 4 0.33Down
Larval Salivary gland441 ± 254 of 4 0.51Down
Larval midgut187 ± 224 of 4 0.22Down
Larval tubule319 ± 34 of 4 0.40Down
Larval hindgut368 ± 254 of 4 0.42Down
Larval fat body403 ± 1224 of 4 0.50Down
Larval trachea347 ± 474 of 4 0.40Down
Larval carcass276 ± 294 of 4 0.32Down
S2 cells (growing)465 ± 94 of 4 0.54Down
Whole fly868 ± 194 of 4

Looking for CG11181-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime