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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11188-RA through 18771 annotations produced 1 hits



(CG11188):

Annotation Number : CG11188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031851
Gbrowse : chr2L:6717626-6719389 (+) // 100.0 //
Probeset : 1624335_at
Accessions : protein= NP_609066;, nucleotide= NM_135222;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031851.
BDGP gene expression has embryonic in situ data for CG11188: 18 pix of staining in 13 body parts.
BioGrid reports that CG11188 interacts with CG4617 CG5050 CG7516 CG4148 CG4651 .
VDRC has 2 RNAi stocks for FBgn0031851 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 14 of 4 0.70Down
Head36 14 of 4 0.50Down
Eye35 24 of 4 0.49Down
Thoracicoabdominal ganglion61 24 of 4 0.80Down
Salivary gland49 64 of 4 0.68Down
Crop45 24 of 4 0.60Down
Midgut47 34 of 4 0.70Down
Tubule32 44 of 4 0.50Down
Hindgut35 24 of 4 0.50Down
Heart37 24 of 4 0.52Down
Fat body48 94 of 4 0.66Down
Ovary122 04 of 4 1.70Up
Testis32 24 of 4 0.40Down
Male accessory glands69 24 of 4 1.00None
Virgin spermatheca27 14 of 4 0.38Down
Mated spermatheca31 34 of 4 0.44Down
Adult carcass43 14 of 4 0.60Down
Larval CNS77 24 of 4 1.06None
Larval Salivary gland52 14 of 4 0.72Down
Larval midgut30 34 of 4 0.42Down
Larval tubule28 14 of 4 0.40Down
Larval hindgut43 54 of 4 0.60Down
Larval fat body22 32 of 4 0.30Down
Larval trachea68 84 of 4 0.94None
Larval carcass59 64 of 4 0.82None
S2 cells (growing)92 24 of 4 1.28Up
Whole fly72 14 of 4

Looking for CG11188-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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