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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11198-RA through 18771 annotations produced 1 hits



Acetyl-CoA carboxylase (ACC):

Annotation Number : CG11198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033246
Gbrowse : chr2R:3861619-3874729 (-) // 99.95 //
Probeset : 1636923_a_at
Accessions : protein= NP_001097226; /// NP_001097227; /// NP_610342; /// NP_724636;, nucleotide= NM_001103756; /// NM_001103757; /// NM_136498; /// NM_165581;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // i
FlyMine data for FBgn0033246.
Homophila reports that CG11198 is a close match (1e-11) to human gene PCCB (NP_000523), a gene associated with Propionicacidemia, 606054 (3).
TRiP has 1 RNAi stocks for FBgn0033246 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain501 174 of 4 0.60Down
Head1430 624 of 4 1.60Up
Eye757 894 of 4 0.86None
Thoracicoabdominal ganglion465 54 of 4 0.50Down
Salivary gland218 144 of 4 0.25Down
Crop3376 1534 of 4 3.80Up
Midgut399 94 of 4 0.50Down
Tubule268 254 of 4 0.30Down
Hindgut1642 534 of 4 1.90Up
Heart3156 784 of 4 3.58Up
Fat body4043 4384 of 4 4.59Up
Ovary384 84 of 4 0.40Down
Testis168 64 of 4 0.20Down
Male accessory glands135 24 of 4 0.20Down
Virgin spermatheca3033 844 of 4 3.44Up
Mated spermatheca2543 1204 of 4 2.89Up
Adult carcass2904 1504 of 4 3.30Up
Larval CNS350 404 of 4 0.40Down
Larval Salivary gland169 34 of 4 0.19Down
Larval midgut326 484 of 4 0.37Down
Larval tubule67 34 of 4 0.10Down
Larval hindgut331 164 of 4 0.38Down
Larval fat body90 44 of 4 0.10Down
Larval trachea302 394 of 4 0.34Down
Larval carcass243 134 of 4 0.28Down
S2 cells (growing)701 294 of 4 0.80Down
Whole fly881 444 of 4

Looking for CG11198-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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