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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1120-RA through 18771 annotations produced 1 hits



(CG1120):

Annotation Number : CG1120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035462
Gbrowse : chr3L:3806713-3809090 (+) // 100.0 //
Probeset : 1639581_at
Accessions : protein= NP_647830;, nucleotide= NM_139573;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035462.
BDGP gene expression has embryonic in situ data for CG1120: 4 pix of staining in 1 body parts.
BioGrid reports that CG1120 interacts with CG4785 CG5274 CG9131 CG15631 CG17256 CG5062 CG7757 .
TRiP has 1 RNAi stocks for FBgn0035462 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035462 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 04 of 4 0.80None
Head26 ± 24 of 4 0.50Down
Eye24 ± 04 of 4 0.51Down
Thoracicoabdominal ganglion41 ± 14 of 4 0.80None
Salivary gland44 ± 54 of 4 0.90None
Crop35 ± 24 of 4 0.70Down
Midgut36 ± 04 of 4 0.70None
Tubule20 ± 14 of 4 0.40Down
Hindgut22 ± 24 of 4 0.50Down
Heart19 ± 04 of 4 0.40Down
Fat body25 ± 24 of 4 0.52Down
Ovary111 ± 34 of 4 2.30Up
Testis30 ± 14 of 4 0.60Down
Male accessory glands33 ± 14 of 4 0.70Down
Virgin spermatheca25 ± 24 of 4 0.51Down
Mated spermatheca36 ± 14 of 4 0.74Down
Adult carcass35 ± 34 of 4 0.70Down
Larval CNS78 ± 54 of 4 1.60Up
Larval Salivary gland49 ± 24 of 4 1.01None
Larval midgut26 ± 24 of 4 0.53Down
Larval tubule31 ± 34 of 4 0.60Down
Larval hindgut24 ± 14 of 4 0.49Down
Larval fat body39 ± 34 of 4 0.80None
Larval trachea29 ± 34 of 4 0.61Down
Larval carcass25 ± 14 of 4 0.52Down
S2 cells (growing)54 ± 24 of 4 1.11None
Whole fly49 ± 44 of 4

Looking for CG1120-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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