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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11202-RA through 18771 annotations produced 1 hits



optomotor-blind-related gene-1 (org-1):

Annotation Number : CG11202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021767
Gbrowse : chrX:8342265-8348327 (-) // 100.0 //
Probeset : 1640607_at
Accessions : protein= NP_511085;, nucleotide= NM_078530;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0021767.
BDGP gene expression has embryonic in situ data for org-1: 19 pix of staining in 3 body parts.
Homophila reports that CG11202 is a close match (2e-40) to human gene TBET;TBX21 (NP_037483), a gene associated with Asthma and nasal polyps, 208550 (3);{Asthma, aspirin-induced, susceptibility to}, 208550 (3).
BioGrid reports that CG11202 interacts with CG8188 CG13627 CG6904 CG8368 .
VDRC has 2 RNAi stocks for FBgn0021767 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head6 ± 10 of 4 0.90None
Eye4 ± 00 of 4 0.62Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.40Down
Salivary gland5 ± 30 of 4 0.74None
Crop3 ± 10 of 4 0.50Down
Midgut13 ± 10 of 4 1.90Up
Tubule2 ± 00 of 4 0.30Down
Hindgut7 ± 00 of 4 1.10None
Heart17 ± 24 of 4 2.43Up
Fat body5 ± 40 of 4 0.77None
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 00 of 4 0.60Down
Male accessory glands2 ± 00 of 4 0.40Down
Virgin spermatheca4 ± 00 of 4 0.63None
Mated spermatheca3 ± 10 of 4 0.55None
Adult carcass20 ± 63 of 4 2.90None
Larval CNS1 ± 20 of 4 0.27Down
Larval Salivary gland5 ± 10 of 4 0.74None
Larval midgut13 ± 11 of 4 1.88Up
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut3 ± 10 of 4 0.45None
Larval fat body1 ± 00 of 4 0.20Down
Larval trachea3 ± 10 of 4 0.49Down
Larval carcass13 ± 00 of 4 1.86Up
S2 cells (growing)24 ± 14 of 4 3.43Up
Whole fly7 ± 00 of 4

Looking for CG11202-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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