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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11205-RA through 18771 annotations produced 2 hits



/// photolyase (CG18853 /// phr):

Annotation Number : CG11205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003082 /// FBgn0042173
Gbrowse : chr2R:3712996-3714825 (+) // 100.0 //
Probeset : 1636758_s_at
Accessions : protein= NP_523653; /// NP_724613; /// NP_724615;, nucleotide= NM_078929; /// NM_165564; /// NM_165566;
Interpro : 0003904 // deoxyribodipyrimidine photo-lyase activity // inferred from sequence or structural similarity /// 0003904 //
FlyMine data for FBgn0003082 /// FBgn0042173.
BioGrid reports that CG11205 interacts with CG9472 CG14487 CG2925 CG32632 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain372 94 of 4 1.50Up
Head212 164 of 4 0.90None
Eye201 114 of 4 0.83None
Thoracicoabdominal ganglion368 374 of 4 1.50Up
Salivary gland260 164 of 4 1.08None
Crop297 94 of 4 1.20Up
Midgut109 84 of 4 0.50Down
Tubule306 44 of 4 1.30Up
Hindgut191 84 of 4 0.80None
Heart243 64 of 4 1.01None
Fat body185 174 of 4 0.77Down
Ovary459 114 of 4 1.90Up
Testis116 24 of 4 0.50Down
Male accessory glands218 114 of 4 0.90None
Virgin spermatheca142 104 of 4 0.59Down
Mated spermatheca136 114 of 4 0.56Down
Adult carcass192 84 of 4 0.80None
Larval CNS438 304 of 4 1.81Up
Larval Salivary gland133 34 of 4 0.55Down
Larval midgut118 24 of 4 0.49Down
Larval tubule187 54 of 4 0.80None
Larval hindgut210 84 of 4 0.87None
Larval fat body97 114 of 4 0.40Down
Larval trachea376 174 of 4 1.56Up
Larval carcass286 144 of 4 1.19None
S2 cells (growing)902 224 of 4 3.73Up
Whole fly241 184 of 4



photolyase (phr):

Annotation Number : CG11205
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003082
Gbrowse : chr2R:3712996-3714825 (+) // 100.0 //
Probeset : 1630728_a_at
Accessions : protein= NP_523653; /// NP_724613;, nucleotide= NM_078929; /// NM_165564;
Interpro : 0003904 // deoxyribodipyrimidine photo-lyase activity // inferred from sequence or structural similarity /// 0003904 //
FlyMine data for FBgn0003082.
BioGrid reports that CG11205 interacts with CG9472 CG14487 CG2925 CG32632 .
TRiP has 1 RNAi stocks for FBgn0003082 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain128 44 of 4 2.10Up
Head54 64 of 4 0.90None
Eye70 64 of 4 1.17None
Thoracicoabdominal ganglion99 134 of 4 1.60None
Salivary gland63 14 of 4 1.05None
Crop76 14 of 4 1.30Up
Midgut28 14 of 4 0.50Down
Tubule55 24 of 4 0.90Down
Hindgut57 44 of 4 0.90None
Heart64 24 of 4 1.06None
Fat body40 54 of 4 0.68Down
Ovary148 54 of 4 2.50Up
Testis33 34 of 4 0.60Down
Male accessory glands65 64 of 4 1.10None
Virgin spermatheca17 04 of 4 0.29Down
Mated spermatheca17 14 of 4 0.29Down
Adult carcass41 14 of 4 0.70Down
Larval CNS129 84 of 4 2.15Up
Larval Salivary gland48 14 of 4 0.79Down
Larval midgut37 24 of 4 0.63Down
Larval tubule50 24 of 4 0.80None
Larval hindgut53 24 of 4 0.88None
Larval fat body38 24 of 4 0.60Down
Larval trachea68 14 of 4 1.13None
Larval carcass50 34 of 4 0.84None
S2 cells (growing)317 114 of 4 5.25Up
Whole fly60 34 of 4

Looking for CG11205-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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