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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11207-RA through 18771 annotations produced 1 hits



fascetto (feo):

Annotation Number : CG11207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030241
Gbrowse : chrX:10746477-10748907 (-) // 100.0 //
Probeset : 1637475_at
Accessions : protein= NP_572658;, nucleotide= NM_132430;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0051233 // spindle midzone // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030241.
BDGP gene expression has embryonic in situ data for CG11207: 34 pix of staining in 23 body parts.
BioGrid reports that CG11207 interacts with CG4192 .
TRiP has 2 RNAi stocks for FBgn0030241 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030241 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.00Down
Head8 ± 10 of 4 0.00Down
Eye10 ± 22 of 4 0.03Down
Thoracicoabdominal ganglion24 ± 23 of 4 0.10Down
Salivary gland15 ± 41 of 4 0.05Down
Crop14 ± 20 of 4 0.00Down
Midgut18 ± 10 of 4 0.10Down
Tubule8 ± 30 of 4 0.00Down
Hindgut9 ± 10 of 4 0.00Down
Heart4 ± 20 of 4 0.01Down
Fat body10 ± 60 of 4 0.03Down
Ovary787 ± 214 of 4 2.40Up
Testis231 ± 74 of 4 0.70Down
Male accessory glands8 ± 20 of 4 0.00Down
Virgin spermatheca14 ± 14 of 4 0.04Down
Mated spermatheca10 ± 32 of 4 0.03Down
Adult carcass21 ± 71 of 4 0.10Down
Larval CNS519 ± 344 of 4 1.56Up
Larval Salivary gland20 ± 34 of 4 0.06Down
Larval midgut28 ± 33 of 4 0.08Down
Larval tubule7 ± 20 of 4 0.00Down
Larval hindgut37 ± 04 of 4 0.11Down
Larval fat body84 ± 194 of 4 0.30Down
Larval trachea141 ± 204 of 4 0.43Down
Larval carcass70 ± 54 of 4 0.21Down
S2 cells (growing)370 ± 94 of 4 1.11Up
Whole fly332 ± 104 of 4

Looking for CG11207-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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