FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11208-RA through 18771 annotations produced 1 hits

(CG11208):

Annotation Number : CG11208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034488
Gbrowse : chr2R:16130255-16132904 (-) // 100.0 //
Probeset : 1630892_at
Accessions : protein= NP_611460;, nucleotide= NM_137616;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0034488.
BDGP gene expression has embryonic in situ data for CG11208: 38 pix of staining in 16 body parts.
BioGrid reports that CG11208 interacts with CG7662 CG8368 .
VDRC has 2 RNAi stocks for FBgn0034488 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	113 ± 4	4 of 4	0.40	Down
Head	118 ± 15	4 of 4	0.40	Down
Eye	116 ± 7	4 of 4	0.40	Down
Thoracicoabdominal ganglion	125 ± 3	4 of 4	0.40	Down
Salivary gland	191 ± 11	4 of 4	0.66	Down
Crop	219 ± 9	4 of 4	0.70	Down
Midgut	935 ± 38	4 of 4	3.20	Up
Tubule	756 ± 23	4 of 4	2.60	Up
Hindgut	138 ± 3	4 of 4	0.50	Down
Heart	171 ± 8	4 of 4	0.59	Down
Fat body	206 ± 33	4 of 4	0.71	Down
Ovary	441 ± 8	4 of 4	1.50	Up
Testis	47 ± 3	4 of 4	0.20	Down
Male accessory glands	230 ± 10	4 of 4	0.80	None
Virgin spermatheca	191 ± 9	4 of 4	0.66	Down
Mated spermatheca	195 ± 10	4 of 4	0.67	Down
Adult carcass	147 ± 7	4 of 4	0.50	Down
Larval CNS	239 ± 19	4 of 4	0.82	None
Larval Salivary gland	336 ± 19	4 of 4	1.15	None
Larval midgut	923 ± 68	4 of 4	3.16	Up
Larval tubule	1621 ± 22	4 of 4	5.50	Up
Larval hindgut	192 ± 20	4 of 4	0.66	Down
Larval fat body	752 ± 69	4 of 4	2.60	Up
Larval trachea	318 ± 37	4 of 4	1.09	None
Larval carcass	136 ± 6	4 of 4	0.47	Down
S2 cells (growing)	347 ± 10	4 of 4	1.19	None
Whole fly	292 ± 22	4 of 4

Looking for CG11208-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720