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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11209-RA through 18771 annotations produced 1 hits



pickpocket 6 (ppk6):

Annotation Number : CG11209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034489
Gbrowse : chr2R:16133430-16135078 (-) // 100.0 //
Probeset : 1627128_at
Accessions : protein= NP_611461;, nucleotide= NM_137617;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferre
FlyMine data for FBgn0034489.
TRiP has 1 RNAi stocks for FBgn0034489 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034489 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head0 ± 00 of 4 0.10None
Eye0 ± 00 of 4 0.16None
Thoracicoabdominal ganglion2 ± 00 of 4 0.40None
Salivary gland15 ± 50 of 4 2.76None
Crop1 ± 00 of 4 0.30None
Midgut1 ± 00 of 4 0.30None
Tubule3 ± 00 of 4 0.60Down
Hindgut12 ± 32 of 4 2.30None
Heart1 ± 00 of 4 0.26None
Fat body1 ± 00 of 4 0.31None
Ovary0 ± 00 of 4 0.20None
Testis7 ± 10 of 4 1.30None
Male accessory glands8 ± 10 of 4 1.50None
Virgin spermatheca4 ± 20 of 4 0.80None
Mated spermatheca3 ± 00 of 4 0.61None
Adult carcass3 ± 10 of 4 0.50None
Larval CNS2 ± 10 of 4 0.44None
Larval Salivary gland6 ± 10 of 4 1.04None
Larval midgut5 ± 20 of 4 0.98None
Larval tubule1 ± 00 of 4 0.20None
Larval hindgut126 ± 314 of 422.06Up
Larval fat body3 ± 10 of 4 0.60None
Larval trachea4 ± 31 of 4 0.86None
Larval carcass23 ± 121 of 4 4.06None
S2 cells (growing)0 ± 00 of 4 0.17None
Whole fly5 ± 10 of 4

Looking for CG11209-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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