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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11221-RA through 18771 annotations produced 1 hits



(CG11221):

Annotation Number : CG11221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031855
Gbrowse : chr2L:6742507-6755686 (+) // 100.0 //
Probeset : 1633777_at
Accessions : protein= NP_609070;, nucleotide= NM_135226;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0031855.
BDGP gene expression has embryonic in situ data for CG11221: 4 pix of staining in 1 body parts.
Homophila reports that CG11221 is a close match (3e-14) to human gene PKCL;PRKCH;PRKCL (NP_006246), a gene associated with {Cerebral infarction, susceptibility to}, 601367 (3).
TRiP has 1 RNAi stocks for FBgn0031855 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031855 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 ± 84 of 412.60Up
Head33 ± 44 of 4 2.60Up
Eye49 ± 24 of 4 3.95Up
Thoracicoabdominal ganglion51 ± 34 of 4 4.10Up
Salivary gland108 ± 54 of 4 8.73Up
Crop87 ± 34 of 4 7.00Up
Midgut14 ± 14 of 4 1.20None
Tubule7 ± 00 of 4 0.60Down
Hindgut40 ± 14 of 4 3.20Up
Heart23 ± 54 of 4 1.89None
Fat body13 ± 43 of 4 1.10None
Ovary1 ± 10 of 4 0.20Down
Testis5 ± 00 of 4 0.40Down
Male accessory glands9 ± 21 of 4 0.70None
Virgin spermatheca16 ± 13 of 4 1.36None
Mated spermatheca23 ± 54 of 4 1.85None
Adult carcass15 ± 22 of 4 1.20None
Larval CNS35 ± 34 of 4 2.83Up
Larval Salivary gland6 ± 21 of 4 0.54None
Larval midgut9 ± 22 of 4 0.76None
Larval tubule11 ± 22 of 4 0.90None
Larval hindgut94 ± 34 of 4 7.55Up
Larval fat body6 ± 10 of 4 0.50Down
Larval trachea10 ± 42 of 4 0.84None
Larval carcass161 ± 124 of 412.99Up
S2 cells (growing)2 ± 00 of 4 0.19Down
Whole fly12 ± 14 of 4

Looking for CG11221-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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