Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11246-RA through 18771 annotations produced 1 hits



chr3L:21722043-21722801 (+) // 100.0 // (Rpb8):

Annotation Number : CG11246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640078_at
Accessions : protein= , nucleotide= NP_649352;
Pathway : 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II prom
Interpro : "0005665 // DNA-directed RNA polymerase II
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 34 of 4 0.70Down
Head140 34 of 4 0.70Down
Eye124 44 of 4 0.58Down
Thoracicoabdominal ganglion198 64 of 4 0.90None
Salivary gland253 44 of 4 1.19Up
Crop175 64 of 4 0.80Down
Midgut170 84 of 4 0.80Down
Tubule205 174 of 4 1.00None
Hindgut169 24 of 4 0.80Down
Heart95 14 of 4 0.45Down
Fat body115 234 of 4 0.54Down
Ovary380 54 of 4 1.80Up
Testis196 84 of 4 0.90None
Male accessory glands402 264 of 4 1.90Up
Virgin spermatheca237 114 of 4 1.12None
Mated spermatheca323 124 of 4 1.52Up
Adult carcass125 44 of 4 0.60Down
Larval CNS459 264 of 4 2.16Up
Larval Salivary gland324 34 of 4 1.52Up
Larval midgut122 64 of 4 0.58Down
Larval tubule103 14 of 4 0.50Down
Larval hindgut178 124 of 4 0.84None
Larval fat body136 84 of 4 0.60Down
Larval trachea345 554 of 4 1.62Up
Larval carcass205 174 of 4 0.97None
S2 cells (growing)294 44 of 4 1.39Up
Whole fly212 84 of 4

Looking for CG11246-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime