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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11247-RB through 18771 annotations produced 1 hits



(CG11247):

Annotation Number : CG11247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037120
Gbrowse : chr3L:21717424-21721770 (-) // 100.0 //
Probeset : 1636887_s_at
Accessions : protein= NP_001097659; /// NP_649351; /// NP_730680;, nucleotide= NM_001104189; /// NM_141094; /// NM_168936;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037120.
BDGP gene expression has embryonic in situ data for CG11247: 22 pix of staining in 16 body parts.
Homophila reports that CG11247 is a close match (6e-11) to human gene GLIS2;NPHP7 (NP_115964), a gene associated with Nephronophthisis 7, 611498 (3).
BioGrid reports that CG11247 interacts with CG3169 CG3536 CG9556 CG11775 CG1212 CG13405 CG13432 CG17802 CG31482 CG5930 CG7535 CG8414 .
TRiP has 1 RNAi stocks for FBgn0037120 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037120 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain685 54 of 4 3.20Up
Head280 204 of 4 1.30None
Eye184 124 of 4 0.86None
Thoracicoabdominal ganglion615 224 of 4 2.90Up
Salivary gland188 64 of 4 0.88None
Crop270 174 of 4 1.30None
Midgut144 44 of 4 0.70None
Tubule215 44 of 4 1.00None
Hindgut168 24 of 4 0.80None
Heart188 64 of 4 0.88None
Fat body140 134 of 4 0.65None
Ovary401 104 of 4 1.90Up
Testis182 54 of 4 0.80None
Male accessory glands181 64 of 4 0.80None
Virgin spermatheca187 134 of 4 0.87None
Mated spermatheca201 74 of 4 0.93None
Adult carcass150 64 of 4 0.70None
Larval CNS640 374 of 4 2.98Up
Larval Salivary gland404 214 of 4 1.88Up
Larval midgut127 64 of 4 0.59None
Larval tubule626 394 of 4 2.90Up
Larval hindgut116 34 of 4 0.54None
Larval fat body202 144 of 4 0.90None
Larval trachea101 24 of 4 0.47Down
Larval carcass150 24 of 4 0.70None
S2 cells (growing)214 54 of 4 1.00None
Whole fly215 324 of 4

Looking for CG11247-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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