FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11254-RA through 18771 annotations produced 1 hits

maelstrom (mael):

Annotation Number : CG11254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016034
Gbrowse : chr3L:22717333-22719335 (+) // 100.0 //
Probeset : 1639178_s_at
Accessions : protein= NP_524217; /// NP_730739; /// NP_788566;, nucleotide= NM_079493; /// NM_168958; /// NM_176388;
Pathway : DNA-dependent // inferred from direct assay /// 0048477 // oogenesis // inferred from mutant phenotype /// 0048477 // o
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0016034.
BDGP gene expression has embryonic in situ data for mael: 27 pix of staining in 13 body parts.
BioGrid reports that CG11254 interacts with CG12559 CG9911 CG18584 CG8159 .
TRiP has 2 RNAi stocks for FBgn0016034 available for purchase.
VDRC has 2 RNAi stocks for FBgn0016034 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 1	4 of 4	0.10	Down
Head	8 ± 0	1 of 4	0.00	Down
Eye	4 ± 1	1 of 4	0.03	Down
Thoracicoabdominal ganglion	27 ± 2	4 of 4	0.20	Down
Salivary gland	6 ± 2	0 of 4	0.04	Down
Crop	3 ± 2	0 of 4	0.00	Down
Midgut	3 ± 1	0 of 4	0.00	Down
Tubule	6 ± 1	0 of 4	0.00	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	5 ± 1	3 of 4	0.03	Down
Fat body	5 ± 3	0 of 4	0.03	Down
Ovary	435 ± 4	4 of 4	2.60	Up
Testis	258 ± 3	4 of 4	1.50	Up
Male accessory glands	2 ± 1	0 of 4	0.00	Down
Virgin spermatheca	3 ± 0	0 of 4	0.02	Down
Mated spermatheca	1 ± 0	0 of 4	0.01	Down
Adult carcass	7 ± 2	0 of 4	0.00	Down
Larval CNS	11 ± 3	4 of 4	0.07	Down
Larval Salivary gland	5 ± 1	1 of 4	0.03	Down
Larval midgut	2 ± 0	0 of 4	0.01	Down
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	4 ± 2	1 of 4	0.03	Down
Larval fat body	62 ± 21	3 of 4	0.40	Down
Larval trachea	5 ± 3	2 of 4	0.03	Down
Larval carcass	3 ± 1	0 of 4	0.02	Down
S2 cells (growing)	142 ± 1	4 of 4	0.84	Down
Whole fly	168 ± 7	4 of 4

Looking for CG11254-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720