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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11265-RA through 18771 annotations produced 1 hits



CG11265 (Trf4-1):

Annotation Number : CG11265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030049
Gbrowse : chrX:8454693-8460971 (+) // 100.0 //
Probeset : 1629310_at
Accessions : protein= NP_001096913; /// NP_001096914; /// NP_996381; /// NP_996382;, nucleotide= NM_001103443; /// NM_001103444; /// NM_206658; /// NM_206659;
Interpro : 0003887 // DNA-directed DNA polymerase activity // non-traceable author statement /// 0003887 // DNA-directed DNA polyme
FlyMine data for FBgn0030049.
BioGrid reports that CG11265 interacts with CG16717 CG11791 CG11885 CG12079 CG12350 CG12672 CG13000 CG14222 CG1475 CG15829 CG16826 CG16983 CG17337 CG2099 CG31258 CG5402 CG6673 CG9470 CG9677 .
VDRC has 3 RNAi stocks for FBgn0030049 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.60None
Head2 10 of 4 0.30None
Eye2 00 of 4 0.34None
Thoracicoabdominal ganglion3 10 of 4 0.40None
Salivary gland2 00 of 4 0.28None
Crop1 00 of 4 0.20None
Midgut1 00 of 4 0.10None
Tubule0 00 of 4 0.10Down
Hindgut0 00 of 4 0.10None
Heart8 12 of 4 1.06None
Fat body26 44 of 4 3.21Up
Ovary20 14 of 4 2.40Up
Testis12 14 of 4 1.50None
Male accessory glands3 10 of 4 0.40None
Virgin spermatheca24 04 of 4 2.94Up
Mated spermatheca10 31 of 4 1.23None
Adult carcass9 50 of 4 1.10None
Larval CNS1 10 of 4 0.21None
Larval Salivary gland3 20 of 4 0.44None
Larval midgut2 00 of 4 0.33None
Larval tubule1 00 of 4 0.10None
Larval hindgut1 00 of 4 0.21None
Larval fat body10 11 of 4 1.30None
Larval trachea1 00 of 4 0.15None
Larval carcass1 00 of 4 0.22None
S2 cells (growing)16 04 of 4 1.90None
Whole fly8 21 of 4

Looking for CG11265-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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