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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11266-RA through 18771 annotations produced 1 hits



(CG11266):

Annotation Number : CG11266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031883
Gbrowse : chr2L:7032712-7037620 (+) // 100.0 //
Probeset : 1623573_s_at
Accessions : protein= NP_609095; /// NP_723243; /// NP_723244; /// NP_723245; /// NP_723246; /// NP_723247; /// NP_723248;, nucleotide= NM_135251; /// NM_164730; /// NM_164731; /// NM_164732; /// NM_164733; /// NM_164734; /// NM_164735;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 000838
FlyMine data for FBgn0031883.
Homophila reports that CG11266 is a close match (1e-18) to human gene LEMD3;MAN1 (NP_055134), a gene associated with Buschke-Ollendorff syndrome, 166700 (3);Melorheostosis with osteopoikilosis, 155950 (3);Osteopoikilosis, 166700 (3).
BioGrid reports that CG11266 interacts with CG11266 CG2843 CG31211 CG31997 CG4602 CG6340 CG6843 CG8273 CG12203 CG13131 CG1420 CG14708 CG2665 CG3231 CG3780 CG6046 CG6163 CG7879 CG31359 CG18743 CG31449 CG5834 CG6489 CG2668 CG31366 .
TRiP has 1 RNAi stocks for FBgn0031883 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain730 364 of 4 2.60Up
Head291 184 of 4 1.00None
Eye381 94 of 4 1.36Up
Thoracicoabdominal ganglion565 124 of 4 2.00Up
Salivary gland353 114 of 4 1.26Up
Crop345 114 of 4 1.20None
Midgut254 164 of 4 0.90None
Tubule392 134 of 4 1.40Up
Hindgut334 114 of 4 1.20None
Heart384 154 of 4 1.37Up
Fat body443 824 of 4 1.58Up
Ovary475 84 of 4 1.70Up
Testis51 14 of 4 0.20Down
Male accessory glands389 234 of 4 1.40Up
Virgin spermatheca618 364 of 4 2.20Up
Mated spermatheca716 284 of 4 2.55Up
Adult carcass332 74 of 4 1.20None
Larval CNS549 114 of 4 1.95Up
Larval Salivary gland399 254 of 4 1.42Up
Larval midgut146 44 of 4 0.52Down
Larval tubule227 24 of 4 0.80None
Larval hindgut247 34 of 4 0.88None
Larval fat body232 34 of 4 0.80None
Larval trachea417 144 of 4 1.48Up
Larval carcass277 124 of 4 0.99None
S2 cells (growing)329 154 of 4 1.17None
Whole fly281 214 of 4

Looking for CG11266-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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