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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11276-RA through 18771 annotations produced 1 hits



Ribosomal protein S4 (RpS4):

Annotation Number : CG11276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011284
Gbrowse : chr3L:13034855-13037012 (+) // 100.0 //
Probeset : 1639949_s_at
Accessions : protein= NP_524053; /// NP_729871;, nucleotide= NM_079329; /// NM_168537;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0011284.
BioGrid reports that CG11276 interacts with CG14112 CG6196 CG6950 CG7146 .
VDRC has 4 RNAi stocks for FBgn0011284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2727 414 of 4 0.70Down
Head4116 1074 of 4 1.10Up
Eye5576 824 of 4 1.51Up
Thoracicoabdominal ganglion3964 1304 of 4 1.10None
Salivary gland10251 3904 of 4 2.78Up
Crop5228 2804 of 4 1.40Up
Midgut4554 1664 of 4 1.20Up
Tubule4464 774 of 4 1.20Up
Hindgut4418 1084 of 4 1.20Up
Heart5988 3674 of 4 1.62Up
Fat body5143 6334 of 4 1.39Up
Ovary3209 694 of 4 0.90Down
Testis895 294 of 4 0.20Down
Male accessory glands8628 2694 of 4 2.30Up
Virgin spermatheca5346 1954 of 4 1.45Up
Mated spermatheca5556 1804 of 4 1.51Up
Adult carcass5568 2594 of 4 1.50Up
Larval CNS2569 1834 of 4 0.70Down
Larval Salivary gland7207 3854 of 4 1.95Up
Larval midgut4324 824 of 4 1.17Up
Larval tubule4502 654 of 4 1.20Up
Larval hindgut3994 634 of 4 1.08None
Larval fat body7058 7974 of 4 1.90Up
Larval trachea5662 2074 of 4 1.54Up
Larval carcass4237 3114 of 4 1.15None
S2 cells (growing)4328 1114 of 4 1.17Up
Whole fly3688 1334 of 4

Looking for CG11276-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime