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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1128-RA through 18771 annotations produced 1 hits



fragment J (alpha-Est9):

Annotation Number : CG1128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015577
Gbrowse : chr3R:3320792-3323086 (-) // 100.0 //
Probeset : 1639001_a_at
Accessions : protein= NP_524258; /// NP_731165;, nucleotide= NM_079534; /// NM_169187;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0015577.
Homophila reports that CG1128 is a close match (1e-12) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
BioGrid reports that CG1128 interacts with CG1927 CG5650 .
VDRC has 3 RNAi stocks for FBgn0015577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 ± 34 of 4 2.80Up
Head130 ± 184 of 4 2.40Up
Eye19 ± 04 of 4 0.37Down
Thoracicoabdominal ganglion111 ± 174 of 4 2.10Up
Salivary gland48 ± 24 of 4 0.89None
Crop83 ± 64 of 4 1.50Up
Midgut72 ± 34 of 4 1.30Up
Tubule30 ± 23 of 4 0.60Down
Hindgut72 ± 54 of 4 1.30Up
Heart26 ± 14 of 4 0.50Down
Fat body81 ± 234 of 4 1.51None
Ovary12 ± 14 of 4 0.20Down
Testis10 ± 10 of 4 0.20Down
Male accessory glands10 ± 40 of 4 0.20Down
Virgin spermatheca17 ± 20 of 4 0.32Down
Mated spermatheca19 ± 20 of 4 0.36Down
Adult carcass124 ± 114 of 4 2.30Up
Larval CNS84 ± 134 of 4 1.58Up
Larval Salivary gland14 ± 40 of 4 0.28Down
Larval midgut54 ± 34 of 4 1.02None
Larval tubule162 ± 74 of 4 3.00Up
Larval hindgut82 ± 54 of 4 1.53Up
Larval fat body16 ± 22 of 4 0.30Down
Larval trachea57 ± 34 of 4 1.08None
Larval carcass84 ± 84 of 4 1.57Up
S2 cells (growing)131 ± 54 of 4 2.45Up
Whole fly53 ± 34 of 4

Looking for CG1128-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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