FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11281-RA through 18771 annotations produced 1 hits

sneaky (snky):

Annotation Number : CG11281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086916
Gbrowse : chr3L:13166781-13169797 (+) // 100.0 //
Probeset : 1633154_at
Accessions : protein= NP_648633;, nucleotide= NM_140376;
Pathway : exchange of chromosomal proteins // inferred from mutant phenotype /// 0035045 // sperm plasma membrane disassembly //
Interpro : 0001669 // acrosomal vesicle // inferred from direct assay /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0086916.
VDRC has 2 RNAi stocks for FBgn0086916 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 1	0 of 4	0.20	None
Head	1 ± 0	0 of 4	0.10	None
Eye	0 ± 0	0 of 4	0.07	None
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.40	None
Salivary gland	17 ± 6	0 of 4	1.94	None
Crop	4 ± 0	0 of 4	0.50	None
Midgut	3 ± 0	0 of 4	0.40	None
Tubule	2 ± 0	0 of 4	0.20	Down
Hindgut	4 ± 1	0 of 4	0.50	None
Heart	5 ± 1	0 of 4	0.58	None
Fat body	3 ± 4	0 of 4	0.42	None
Ovary	0 ± 0	0 of 4	0.10	None
Testis	101 ± 3	4 of 4	11.40	Up
Male accessory glands	6 ± 2	0 of 4	0.70	None
Virgin spermatheca	3 ± 0	0 of 4	0.33	None
Mated spermatheca	3 ± 1	0 of 4	0.34	None
Adult carcass	2 ± 0	0 of 4	0.30	None
Larval CNS	0 ± 0	0 of 4	0.08	None
Larval Salivary gland	0 ± 0	0 of 4	0.10	None
Larval midgut	1 ± 0	0 of 4	0.12	None
Larval tubule	2 ± 1	0 of 4	0.30	None
Larval hindgut	1 ± 0	0 of 4	0.11	None
Larval fat body	11 ± 8	1 of 4	1.30	None
Larval trachea	0 ± 0	0 of 4	0.06	None
Larval carcass	2 ± 0	0 of 4	0.23	None
S2 cells (growing)	0 ± 0	0 of 4	0.10	None
Whole fly	8 ± 3	0 of 4

Looking for CG11281-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720