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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11284-RA through 18771 annotations produced 1 hits


Annotation Number : CG11284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030056
Gbrowse : chrX:8575614-8582793 (+) // 100.0 //
Probeset : 1633847_at
Accessions : protein= NP_572497;, nucleotide= NM_132269;
Interpro : 0004089 // carbonate dehydratase activity // inferred from sequence or structural similarity /// 0004089 // carbonate de
FlyMine data for FBgn0030056.
Homophila reports that CG11284 is a close match (1e-22) to human gene CA4;RP17 (NP_000708), a gene associated with Retinitis pigmentosa-17, 600852 (3).
BioGrid reports that CG11284 interacts with CG14815 CG9986 .
VDRC has 3 RNAi stocks for FBgn0030056 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain292 54 of 4 0.60Down
Head279 74 of 4 0.60Down
Eye224 114 of 4 0.46Down
Thoracicoabdominal ganglion284 74 of 4 0.60Down
Salivary gland902 194 of 4 1.83Up
Crop382 114 of 4 0.80Down
Midgut546 84 of 4 1.10None
Tubule1303 254 of 4 2.60Up
Hindgut585 174 of 4 1.20Up
Heart286 64 of 4 0.58Down
Fat body340 144 of 4 0.69Down
Ovary979 124 of 4 2.00Up
Testis33 14 of 4 0.10Down
Male accessory glands1456 174 of 4 3.00Up
Virgin spermatheca597 264 of 4 1.21Up
Mated spermatheca615 314 of 4 1.25Up
Adult carcass239 64 of 4 0.50Down
Larval CNS347 114 of 4 0.71Down
Larval Salivary gland636 204 of 4 1.29Up
Larval midgut942 214 of 4 1.91Up
Larval tubule994 104 of 4 2.00Up
Larval hindgut498 114 of 4 1.01None
Larval fat body765 564 of 4 1.60Up
Larval trachea565 464 of 4 1.15None
Larval carcass328 204 of 4 0.67Down
S2 cells (growing)1013 194 of 4 2.06Up
Whole fly492 214 of 4

Looking for CG11284-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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