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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11300-RA through 18771 annotations produced 1 hits



(CG11300):

Annotation Number : CG11300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034901
Gbrowse : chr2R:19639466-19640020 (+) // 100.0 //
Probeset : 1624206_at
Accessions : protein= NP_611825;, nucleotide= NM_137981;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034901.
BioGrid reports that CG11300 interacts with CG6386 CG2852 CG31029 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 1.00None
Head4 ± 10 of 4 0.70None
Eye4 ± 10 of 4 0.71None
Thoracicoabdominal ganglion6 ± 20 of 4 1.10None
Salivary gland22 ± 40 of 4 3.86Up
Crop10 ± 10 of 4 1.70None
Midgut16 ± 20 of 4 2.70Up
Tubule6 ± 00 of 4 1.10None
Hindgut7 ± 20 of 4 1.30None
Heart1 ± 00 of 4 0.24None
Fat body3 ± 10 of 4 0.57None
Ovary1 ± 00 of 4 0.20None
Testis36 ± 14 of 4 6.20Up
Male accessory glands16 ± 30 of 4 2.80None
Virgin spermatheca6 ± 20 of 4 1.11None
Mated spermatheca11 ± 30 of 4 1.85None
Adult carcass20 ± 50 of 4 3.40None
Larval CNS6 ± 40 of 4 1.14None
Larval Salivary gland8120 ± 5034 of 41370.49Up
Larval midgut19 ± 31 of 4 3.24Up
Larval tubule12 ± 00 of 4 2.20None
Larval hindgut8 ± 10 of 4 1.38None
Larval fat body17 ± 52 of 4 2.90None
Larval trachea76 ± 1312 of 412.90None
Larval carcass6 ± 10 of 4 1.04None
S2 cells (growing)10 ± 00 of 4 1.81None
Whole fly5 ± 20 of 4

Looking for CG11300-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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