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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11313-RA through 18771 annotations produced 1 hits



(CG11313):

Annotation Number : CG11313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039798
Gbrowse : chr3R:26555648-26556868 (-) // 100.0 //
Probeset : 1631414_at
Accessions : protein= NP_651821;, nucleotide= NM_143564;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0039798.
Homophila reports that CG11313 is a close match (2e-12) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 3 RNAi stocks for FBgn0039798 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head2 10 of 4 0.60None
Eye0 00 of 4 0.28None
Thoracicoabdominal ganglion2 10 of 4 0.90None
Salivary gland8 20 of 4 2.34None
Crop5 10 of 4 1.60None
Midgut17 12 of 4 5.20Up
Tubule5 00 of 4 1.50Up
Hindgut3 10 of 4 0.90None
Heart0 00 of 4 0.20None
Fat body0 00 of 4 0.26None
Ovary0 00 of 4 0.20None
Testis6 10 of 4 1.90None
Male accessory glands7 20 of 4 2.20None
Virgin spermatheca1 00 of 4 0.38None
Mated spermatheca2 00 of 4 0.71None
Adult carcass1 00 of 4 0.30None
Larval CNS4 10 of 4 1.39None
Larval Salivary gland31 24 of 4 9.04Up
Larval midgut21 10 of 4 6.27Up
Larval tubule9 22 of 4 2.70None
Larval hindgut28 103 of 4 8.39None
Larval fat body2222 1274 of 4648.90Up
Larval trachea12 81 of 4 3.58None
Larval carcass9 30 of 4 2.87None
S2 cells (growing)23 24 of 4 6.93Up
Whole fly3 00 of 4

Looking for CG11313-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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