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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11318-RA through 18771 annotations produced 1 hits



(CG11318):

Annotation Number : CG11318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039818
Gbrowse : chr3R:26932087-26934910 (-) // 100.0 //
Probeset : 1632566_at
Accessions : protein= NP_651842;, nucleotide= NM_143585;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled recep
FlyMine data for FBgn0039818.
Homophila reports that CG11318 is a close match (6e-14) to human gene GPR126;STQTL1;VIGR (NP_940971), a gene associated with [Stature QTL1], 606255 (3).
VDRC has 3 RNAi stocks for FBgn0039818 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye2 10 of 4 0.14Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland8 30 of 4 0.48None
Crop1 00 of 4 0.10Down
Midgut113 74 of 4 6.30Up
Tubule3 10 of 4 0.20Down
Hindgut27 30 of 4 1.50None
Heart1 00 of 4 0.10Down
Fat body2 20 of 4 0.16Down
Ovary2 10 of 4 0.10Down
Testis4 10 of 4 0.20Down
Male accessory glands55 14 of 4 3.10Up
Virgin spermatheca2 00 of 4 0.12Down
Mated spermatheca4 10 of 4 0.22Down
Adult carcass2 00 of 4 0.20Down
Larval CNS3 10 of 4 0.19Down
Larval Salivary gland3 10 of 4 0.19Down
Larval midgut229 164 of 412.81Up
Larval tubule6 20 of 4 0.30Down
Larval hindgut62 44 of 4 3.46Up
Larval fat body4 00 of 4 0.20Down
Larval trachea3 20 of 4 0.22Down
Larval carcass22 41 of 4 1.27None
S2 cells (growing)9 00 of 4 0.52None
Whole fly17 31 of 4

Looking for CG11318-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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