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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11319-RA through 18771 annotations produced 1 hits



(CG11319):

Annotation Number : CG11319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031835
Gbrowse : chr2L:6568389-6601066 (-) // 100.0 //
Probeset : 1634246_at
Accessions : protein= NP_609051;, nucleotide= NM_135207;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase act
FlyMine data for FBgn0031835.
VDRC has 1 RNAi stocks for FBgn0031835 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain729 ± 344 of 418.20Up
Head237 ± 404 of 4 5.90Up
Eye150 ± 104 of 4 3.76Up
Thoracicoabdominal ganglion784 ± 324 of 419.60Up
Salivary gland1 ± 00 of 4 0.05Down
Crop292 ± 354 of 4 7.30Up
Midgut12 ± 13 of 4 0.30Down
Tubule17 ± 13 of 4 0.40Down
Hindgut214 ± 194 of 4 5.40Up
Heart140 ± 124 of 4 3.50Up
Fat body10 ± 44 of 4 0.26Down
Ovary2 ± 00 of 4 0.10Down
Testis45 ± 44 of 4 1.10None
Male accessory glands133 ± 74 of 4 3.30Up
Virgin spermatheca50 ± 64 of 4 1.26None
Mated spermatheca79 ± 94 of 4 1.98Up
Adult carcass19 ± 34 of 4 0.50None
Larval CNS336 ± 344 of 4 8.37Up
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut14 ± 14 of 4 0.36Down
Larval tubule11 ± 14 of 4 0.30Down
Larval hindgut5 ± 13 of 4 0.13Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea2 ± 31 of 4 0.07Down
Larval carcass5 ± 04 of 4 0.13Down
S2 cells (growing)10 ± 14 of 4 0.26Down
Whole fly40 ± 84 of 4

Looking for CG11319-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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