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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11321-RA through 18771 annotations produced 1 hits



(CG11321):

Annotation Number : CG11321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031857
Gbrowse : chr2L:6760526-6770644 (-) // 100.0 //
Probeset : 1630201_a_at
Accessions : protein= NP_001162896; /// NP_609072; /// NP_723214;, nucleotide= NM_001169425; /// NM_135228; /// NM_164709;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0031857.
BioGrid reports that CG11321 interacts with CG9902 .
VDRC has 2 RNAi stocks for FBgn0031857 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10Down
Head78 ± 104 of 4 1.50None
Eye10 ± 21 of 4 0.20Down
Thoracicoabdominal ganglion11 ± 00 of 4 0.20Down
Salivary gland20 ± 40 of 4 0.40Down
Crop82 ± 114 of 4 1.60None
Midgut11 ± 10 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut50 ± 44 of 4 1.00None
Heart45 ± 34 of 4 0.89None
Fat body11 ± 31 of 4 0.23Down
Ovary3 ± 10 of 4 0.10Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands55 ± 74 of 4 1.10None
Virgin spermatheca6 ± 20 of 4 0.13Down
Mated spermatheca6 ± 20 of 4 0.13Down
Adult carcass233 ± 184 of 4 4.60Up
Larval CNS6 ± 20 of 4 0.14Down
Larval Salivary gland4 ± 10 of 4 0.09Down
Larval midgut24 ± 20 of 4 0.49Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut17 ± 21 of 4 0.35Down
Larval fat body7 ± 10 of 4 0.10Down
Larval trachea7 ± 20 of 4 0.14Down
Larval carcass52 ± 74 of 4 1.05None
S2 cells (growing)5 ± 10 of 4 0.10Down
Whole fly50 ± 44 of 4

Looking for CG11321-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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