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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11324-RA through 18771 annotations produced 1 hits



d-Homer (homer):

Annotation Number : CG11324
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025777
Gbrowse : chr2L:6720394-6723355 (-) // 100.0 //
Probeset : 1634147_a_at
Accessions : protein= NP_001036341; /// NP_477396; /// NP_723207;, nucleotide= NM_001042876; /// NM_058048; /// NM_164706;
Pathway : 0030425 // dendrite // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025777.
BDGP gene expression has embryonic in situ data for homer: 12 pix of staining in 16 body parts.
BioGrid reports that CG11324 interacts with CG13428 CG14437 CG14982 CG2091 CG31291 CG32514 CG3683 CG4204 CG8235 CG11576 CG13189 CG13222 CG13599 CG15685 CG1637 CG17322 CG2086 CG2099 CG31550 CG4168 CG4231 CG4554 CG4945 CG5186 CG5441 CG5670 CG5717 CG6477 CG6543 CG7172 CG7952 CG8834 CG8998 CG9331 CG9591 CG17210 CG5106 CG33261 .
TRiP has 2 RNAi stocks for FBgn0025777 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 34 of 4 0.80None
Head63 ± 104 of 4 0.90None
Eye113 ± 134 of 4 1.67Up
Thoracicoabdominal ganglion45 ± 54 of 4 0.70Down
Salivary gland18 ± 50 of 4 0.27Down
Crop48 ± 54 of 4 0.70Down
Midgut28 ± 34 of 4 0.40Down
Tubule22 ± 02 of 4 0.30Down
Hindgut32 ± 04 of 4 0.50Down
Heart13 ± 24 of 4 0.20Down
Fat body12 ± 10 of 4 0.18Down
Ovary111 ± 24 of 4 1.60Up
Testis143 ± 54 of 4 2.10Up
Male accessory glands23 ± 24 of 4 0.30Down
Virgin spermatheca9 ± 20 of 4 0.14Down
Mated spermatheca7 ± 20 of 4 0.11Down
Adult carcass24 ± 12 of 4 0.40Down
Larval CNS44 ± 24 of 4 0.65Down
Larval Salivary gland21 ± 33 of 4 0.31Down
Larval midgut12 ± 10 of 4 0.18Down
Larval tubule35 ± 34 of 4 0.50Down
Larval hindgut24 ± 24 of 4 0.36Down
Larval fat body35 ± 102 of 4 0.50Down
Larval trachea20 ± 34 of 4 0.30Down
Larval carcass24 ± 44 of 4 0.37Down
S2 cells (growing)61 ± 14 of 4 0.90None
Whole fly67 ± 54 of 4

Looking for CG11324-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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