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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11325-RB through 18771 annotations produced 2 hits



hormone receptor (GRHR):

Annotation Number : CG11325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025595
Gbrowse : chr2L:6711295-6716183 (-) // 99.85 //
Probeset : 1635442_a_at
Accessions : protein= NP_477387; /// NP_723206; /// NP_995639;, nucleotide= NM_058039; /// NM_164705; /// NM_205917;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016021 // integral to mem
Interpro : 0001653 // peptide receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0025595.
Homophila reports that CG11325 is a close match (3e-11) to human gene ASRT2;GPR154;GPRA;PGR14;VRR1 (NP_997056), a gene associated with {Asthma, susceptibility to, 2}, 608584 (3).
BioGrid reports that CG11325 interacts with CG11635 CG2865 .
TRiP has 1 RNAi stocks for FBgn0025595 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025595 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 24 of 4 0.10Down
Head415 ± 354 of 4 3.10Up
Eye183 ± 254 of 4 1.39None
Thoracicoabdominal ganglion16 ± 14 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.05Down
Crop19 ± 14 of 4 0.20Down
Midgut1 ± 00 of 4 0.00Down
Tubule7 ± 11 of 4 0.10Down
Hindgut28 ± 24 of 4 0.20Down
Heart593 ± 194 of 4 4.50Up
Fat body1942 ± 1524 of 414.72Up
Ovary0 ± 00 of 4 0.00Down
Testis6 ± 13 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca1246 ± 444 of 4 9.45Up
Mated spermatheca1574 ± 694 of 411.93Up
Adult carcass502 ± 184 of 4 3.80Up
Larval CNS1 ± 11 of 4 0.01Down
Larval Salivary gland31 ± 24 of 4 0.24Down
Larval midgut3 ± 10 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut20 ± 14 of 4 0.16Down
Larval fat body860 ± 594 of 4 6.50Up
Larval trachea9 ± 43 of 4 0.08Down
Larval carcass9 ± 14 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly132 ± 144 of 4



hormone receptor (GRHR):

Annotation Number : CG11325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025595
Gbrowse : chr2L:6711295-6716183 (-) // 99.85 //
Probeset : 1629609_at
Accessions : protein= NP_477387; /// NP_723206; /// NP_995639;, nucleotide= NM_058039; /// NM_164705; /// NM_205917;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016021 // integral to mem
Interpro : 0001653 // peptide receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0025595.
Homophila reports that CG11325 is a close match (3e-11) to human gene ASRT2;GPR154;GPRA;PGR14;VRR1 (NP_997056), a gene associated with {Asthma, susceptibility to, 2}, 608584 (3).
BioGrid reports that CG11325 interacts with CG11635 CG2865 .
TRiP has 1 RNAi stocks for FBgn0025595 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025595 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.40Down
Head23 ± 14 of 4 2.30Up
Eye18 ± 24 of 4 1.79None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40Down
Salivary gland4 ± 20 of 4 0.49None
Crop1 ± 00 of 4 0.20Down
Midgut4 ± 10 of 4 0.40Down
Tubule2 ± 00 of 4 0.30Down
Hindgut5 ± 10 of 4 0.50Down
Heart36 ± 44 of 4 3.56Up
Fat body137 ± 284 of 413.57Up
Ovary1 ± 10 of 4 0.20Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.50None
Virgin spermatheca41 ± 34 of 4 4.08Up
Mated spermatheca63 ± 34 of 4 6.22Up
Adult carcass46 ± 54 of 4 4.60Up
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland3 ± 20 of 4 0.36None
Larval midgut1 ± 00 of 4 0.19Down
Larval tubule2 ± 10 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.16Down
Larval fat body81 ± 94 of 4 8.10Up
Larval trachea2 ± 00 of 4 0.29Down
Larval carcass3 ± 11 of 4 0.30Down
S2 cells (growing)1 ± 00 of 4 0.16Down
Whole fly10 ± 03 of 4

Looking for CG11325-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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