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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11327-RB through 18771 annotations produced 1 hits


(CG11327):

Annotation Number : CG11327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031849
Gbrowse : chr2L:6684904-6686995 (-) // 100.0 //
Probeset : 1641384_a_at
Accessions : protein= NP_609065; /// NP_787993;, nucleotide= NM_135221; /// NM_175979;
FlyMine data for FBgn0031849.
BDGP gene expression has embryonic in situ data for CG11327: 4 pix of staining in 1 body parts.
BioGrid reports that CG11327 interacts with CG3265 CG11761 CG12079 CG12194 CG12273 CG13588 CG13893 CG14694 CG14990 CG14993 CG1504 CG15591 CG33553 CG16904 CG16984 CG17287 CG17342 CG1740 CG17746 CG18031 CG1856 CG1873 CG2124 CG2183 CG2678 CG31523 CG31676 CG3314 CG3579 CG3699 CG4111 CG4147 CG4299 CG4554 CG4603 CG5140 CG5149 CG5288 CG5619 CG6222 CG6375 CG6773 CG7221 CG7409 CG7992 CG8055 CG8859 CG8924 CG8936 CG8997 CG9012 CG9361 Dmel CG4460 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.06Down
Crop3 ± 10 of 4 0.00Down
Midgut6 ± 00 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut5 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.02Down
Fat body10 ± 30 of 4 0.07Down
Ovary4 ± 00 of 4 0.00Down
Testis1524 ± 424 of 410.90Up
Male accessory glands8 ± 41 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.04Down
Mated spermatheca4 ± 10 of 4 0.03Down
Adult carcass6 ± 31 of 4 0.00Down
Larval CNS5 ± 12 of 4 0.04Down
Larval Salivary gland4 ± 00 of 4 0.03Down
Larval midgut6 ± 03 of 4 0.05Down
Larval tubule4 ± 11 of 4 0.00Down
Larval hindgut6 ± 12 of 4 0.05Down
Larval fat body262 ± 1224 of 4 1.90None
Larval trachea10 ± 92 of 4 0.07Down
Larval carcass5 ± 10 of 4 0.04Down
S2 cells (growing)3 ± 01 of 4 0.02Down
Whole fly140 ± 64 of 4

Looking for CG11327-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime