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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1133-RA through 18771 annotations produced 1 hits

odd-paired (opa):

Annotation Number : CG1133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003002
Gbrowse : chr3R:678566-695705 (+) // 99.86 //
Probeset : 1628865_at
Accessions : protein= NP_524228;, nucleotide= NM_079504;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0003002.
BDGP gene expression has embryonic in situ data for opa: 12 pix of staining in 5 body parts.
Homophila reports that CG1133 is a close match (7e-12) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
BioGrid reports that CG1133 interacts with CG17666 CG30420 CG4220 CG9663 CG13030 CG13458 CG13728 CG1391 CG14534 CG15351 CG17946 CG17956 CG1958 CG3016 Dmel CG34168 CG5537 CG5840 CG7392 CG7808 CG8319 CG9911 CG1683 CG16944 .
TRiP has 1 RNAi stocks for FBgn0003002 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003002 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 24 of 411.40Up
Head31 14 of 4 4.50Up
Eye6 23 of 4 0.93None
Thoracicoabdominal ganglion52 24 of 4 7.60Up
Salivary gland11 31 of 4 1.68None
Crop5 12 of 4 0.80None
Midgut13 14 of 4 2.00Up
Tubule4 10 of 4 0.60Down
Hindgut4 01 of 4 0.60None
Heart3 00 of 4 0.44None
Fat body11 24 of 4 1.68None
Ovary1 00 of 4 0.30None
Testis0 00 of 4 0.10Down
Male accessory glands4 10 of 4 0.70None
Virgin spermatheca5 10 of 4 0.75None
Mated spermatheca3 10 of 4 0.52None
Adult carcass17 11 of 4 2.50Up
Larval CNS313 404 of 445.23Up
Larval Salivary gland4 10 of 4 0.69None
Larval midgut18 14 of 4 2.72Up
Larval tubule5 01 of 4 0.70None
Larval hindgut5 12 of 4 0.77None
Larval fat body1 00 of 4 0.30None
Larval trachea15 54 of 4 2.18Up
Larval carcass26 24 of 4 3.78Up
S2 cells (growing)2 00 of 4 0.34None
Whole fly6 13 of 4

Looking for CG1133-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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