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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG11330-RA through 18771 annotations produced 1 hits


cortex (cort):

Annotation Number : CG11330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000351
Gbrowse : chr2L:6674636-6676635 (-) // 100.0 //
Probeset : 1632624_at
Accessions : protein= NP_523494;, nucleotide= NM_078770;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0010997 // anaphase-promoting complex binding // inferred from physical interaction
FlyMine data for FBgn0000351.
BioGrid reports that CG11330 interacts with CG33133 CG33133 CG33133 CG33133 .
TRiP has 1 RNAi stocks for FBgn0000351 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000351 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 14 of 4 0.10Down
Head4 ± 10 of 4 0.00Down
Eye6 ± 01 of 4 0.05Down
Thoracicoabdominal ganglion16 ± 04 of 4 0.10Down
Salivary gland9 ± 10 of 4 0.07Down
Crop11 ± 02 of 4 0.10Down
Midgut8 ± 20 of 4 0.10Down
Tubule9 ± 40 of 4 0.10Down
Hindgut11 ± 02 of 4 0.10Down
Heart15 ± 04 of 4 0.11Down
Fat body9 ± 10 of 4 0.07Down
Ovary331 ± 34 of 4 2.40Up
Testis7 ± 04 of 4 0.10Down
Male accessory glands20 ± 34 of 4 0.10Down
Virgin spermatheca10 ± 23 of 4 0.07Down
Mated spermatheca7 ± 21 of 4 0.05Down
Adult carcass14 ± 42 of 4 0.10Down
Larval CNS19 ± 14 of 4 0.14Down
Larval Salivary gland5 ± 10 of 4 0.04Down
Larval midgut4 ± 10 of 4 0.03Down
Larval tubule8 ± 12 of 4 0.10Down
Larval hindgut6 ± 01 of 4 0.05Down
Larval fat body16 ± 11 of 4 0.10Down
Larval trachea12 ± 34 of 4 0.09Down
Larval carcass9 ± 01 of 4 0.07Down
S2 cells (growing)12 ± 14 of 4 0.09Down
Whole fly139 ± 44 of 4

Looking for CG11330-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime