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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11335-RA through 18771 annotations produced 1 hits



lysyl oxidase-like (lox):

Annotation Number : CG11335
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039848
Gbrowse : chr3R:27284305-27285449 (-) // 100.0 //
Probeset : 1629212_at
Accessions : protein= NP_524607;, nucleotide= NM_079868;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0004720 // protein-lysine 6-oxidase activity // inferred from direct assay /// 0004720 // protein-lysine 6-oxidase acti
FlyMine data for FBgn0039848.
Homophila reports that CG11335 is a close match (7e-40) to human gene LOX (NP_002308), a gene associated with Cutis laxa, recessive, type I, 219100 (1).
VDRC has 3 RNAi stocks for FBgn0039848 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.80None
Head8 ± 20 of 4 0.80None
Eye6 ± 00 of 4 0.67None
Thoracicoabdominal ganglion9 ± 11 of 4 1.00None
Salivary gland17 ± 20 of 4 1.75None
Crop9 ± 10 of 4 1.00None
Midgut11 ± 21 of 4 1.20None
Tubule67 ± 84 of 4 6.80Up
Hindgut11 ± 10 of 4 1.20None
Heart6 ± 00 of 4 0.66None
Fat body10 ± 50 of 4 1.09None
Ovary2 ± 00 of 4 0.20None
Testis8 ± 10 of 4 0.90None
Male accessory glands3 ± 10 of 4 0.40None
Virgin spermatheca15 ± 20 of 4 1.54None
Mated spermatheca10 ± 10 of 4 1.03None
Adult carcass9 ± 20 of 4 1.00None
Larval CNS12 ± 13 of 4 1.24None
Larval Salivary gland7 ± 10 of 4 0.73None
Larval midgut4 ± 10 of 4 0.49None
Larval tubule16 ± 23 of 4 1.70None
Larval hindgut3 ± 10 of 4 0.40None
Larval fat body15 ± 30 of 4 1.60None
Larval trachea2 ± 10 of 4 0.29None
Larval carcass7 ± 20 of 4 0.76None
S2 cells (growing)11 ± 00 of 4 1.14None
Whole fly9 ± 30 of 4

Looking for CG11335-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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