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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11347-RD through 18771 annotations produced 1 hits



(CG11347):

Annotation Number : CG11347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035542
Gbrowse : chr3L:4407144-4420266 (+) // 100.0 //
Probeset : 1623536_s_at
Accessions : protein= NP_001097503; /// NP_001097504; /// NP_647900; /// NP_728990; /// NP_728991; /// NP_728992;, nucleotide= NM_001104033; /// NM_001104034; /// NM_139643; /// NM_168083; /// NM_168084; /// NM_168085;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035542.
BDGP gene expression has embryonic in situ data for CG11347: 74 pix of staining in 28 body parts.
BioGrid reports that CG11347 interacts with CG11876 CG12334 CG32672 CG31224 CG3314 CG5792 .
VDRC has 3 RNAi stocks for FBgn0035542 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain375 94 of 4 1.70Up
Head288 324 of 4 1.30None
Eye711 314 of 4 3.25Up
Thoracicoabdominal ganglion365 154 of 4 1.70Up
Salivary gland322 674 of 4 1.47None
Crop681 364 of 4 3.10Up
Midgut142 24 of 4 0.70Down
Tubule89 153 of 4 0.40Down
Hindgut374 104 of 4 1.70Up
Heart808 374 of 4 3.69Up
Fat body599 1434 of 4 2.74Up
Ovary33 34 of 4 0.20Down
Testis145 24 of 4 0.70Down
Male accessory glands253 94 of 4 1.20Up
Virgin spermatheca213 74 of 4 0.98None
Mated spermatheca307 124 of 4 1.41Up
Adult carcass728 734 of 4 3.30Up
Larval CNS83 34 of 4 0.38Down
Larval Salivary gland40 24 of 4 0.18Down
Larval midgut368 654 of 4 1.68None
Larval tubule212 124 of 4 1.00None
Larval hindgut224 144 of 4 1.02None
Larval fat body385 344 of 4 1.80Up
Larval trachea263 484 of 4 1.20None
Larval carcass528 1414 of 4 2.42None
S2 cells (growing)118 54 of 4 0.54Down
Whole fly218 84 of 4

Looking for CG11347-RD. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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