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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11349-RA through 18771 annotations produced 1 hits



(CG11349):

Annotation Number : CG11349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035550
Gbrowse : chr3L:4473144-4475095 (+) // 100.0 //
Probeset : 1633659_at
Accessions : protein= NP_647908;, nucleotide= NM_139651;
FlyMine data for FBgn0035550.
BDGP gene expression has embryonic in situ data for CG11349: 6 pix of staining in 1 body parts.
BioGrid reports that CG11349 interacts with CG4853 CG11881 CG13580 CG13627 CG13742 .
VDRC has 2 RNAi stocks for FBgn0035550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.20None
Head2 ± 10 of 4 1.00None
Eye2 ± 00 of 4 0.87None
Thoracicoabdominal ganglion4 ± 10 of 4 1.70None
Salivary gland3 ± 10 of 4 1.35None
Crop4 ± 00 of 4 1.80None
Midgut3 ± 10 of 4 1.20None
Tubule1 ± 00 of 4 0.70Down
Hindgut3 ± 10 of 4 1.20None
Heart1 ± 00 of 4 0.61None
Fat body3 ± 20 of 4 1.13None
Ovary2 ± 00 of 4 0.80None
Testis1 ± 00 of 4 0.60None
Male accessory glands3 ± 10 of 4 1.30None
Virgin spermatheca0 ± 00 of 4 0.19None
Mated spermatheca1 ± 00 of 4 0.41None
Adult carcass2 ± 00 of 4 0.80None
Larval CNS5 ± 22 of 4 1.94None
Larval Salivary gland1 ± 00 of 4 0.70None
Larval midgut4 ± 10 of 4 1.47None
Larval tubule5 ± 10 of 4 1.90None
Larval hindgut3 ± 00 of 4 1.21None
Larval fat body4 ± 10 of 4 1.70None
Larval trachea5 ± 33 of 4 2.11None
Larval carcass1252 ± 654 of 4459.56Up
S2 cells (growing)2 ± 00 of 4 0.91None
Whole fly2 ± 00 of 4

Looking for CG11349-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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