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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1137-RA through 18771 annotations produced 1 hits


(CG1137):

Annotation Number : CG1137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037454
Gbrowse : chr3R:2384336-2386073 (-) // 100.0 //
Probeset : 1628736_at
Accessions : protein= NP_649665;, nucleotide= NM_141408;
Interpro : 0008233 // peptidase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // in
FlyMine data for FBgn0037454.
BioGrid reports that CG1137 interacts with CG11763 CG16728 CG2699 CG4325 .
VDRC has 1 RNAi stocks for FBgn0037454 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland7 ± 20 of 4 0.06Down
Crop2 ± 00 of 4 0.00Down
Midgut1 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body5 ± 10 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis1148 ± 244 of 4 9.80Up
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca3 ± 10 of 4 0.03Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland5 ± 20 of 4 0.05Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body112 ± 594 of 4 1.00None
Larval trachea6 ± 51 of 4 0.05Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)4 ± 00 of 4 0.04Down
Whole fly117 ± 124 of 4

Looking for CG1137-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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