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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11373-RA through 18771 annotations produced 1 hits



(CG11373):

Annotation Number : CG11373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040679
Gbrowse : chr3R:1786044-1786707 (-) // 100.0 //
Probeset : 1623542_at
Accessions : protein= NP_652319;, nucleotide= NM_144062;
FlyMine data for FBgn0040679.
VDRC has 3 RNAi stocks for FBgn0040679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland2 00 of 4 0.02Down
Crop3 00 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart2 10 of 4 0.02Down
Fat body2 10 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis1185 214 of 4 9.80Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.02Down
Adult carcass9 40 of 4 0.10Down
Larval CNS1 20 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.03Down
Larval midgut3 10 of 4 0.03Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body116 614 of 4 1.00None
Larval trachea4 51 of 4 0.04Down
Larval carcass2 10 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly121 74 of 4

Looking for CG11373-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime