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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11391-RA through 18771 annotations produced 1 hits



(CG11391):

Annotation Number : CG11391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038732
Gbrowse : chr3R:15604487-15606294 (+) // 100.0 //
Probeset : 1633179_at
Accessions : protein= NP_650830;, nucleotide= NM_142573;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0038732.
BioGrid reports that CG11391 interacts with CG4167 .
VDRC has 2 RNAi stocks for FBgn0038732 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 20 of 4 0.60None
Head429 ± 324 of 412.60Up
Eye68 ± 303 of 4 2.00None
Thoracicoabdominal ganglion13 ± 30 of 4 0.40Down
Salivary gland5 ± 00 of 4 0.17Down
Crop6 ± 10 of 4 0.20Down
Midgut3 ± 00 of 4 0.10Down
Tubule7 ± 10 of 4 0.20Down
Hindgut3 ± 00 of 4 0.10Down
Heart3 ± 00 of 4 0.10Down
Fat body10 ± 50 of 4 0.30Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.16Down
Mated spermatheca6 ± 20 of 4 0.18Down
Adult carcass11 ± 20 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.08Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut5 ± 20 of 4 0.17Down
Larval tubule6 ± 20 of 4 0.20Down
Larval hindgut3 ± 00 of 4 0.09Down
Larval fat body7 ± 30 of 4 0.20Down
Larval trachea5 ± 10 of 4 0.16Down
Larval carcass5 ± 20 of 4 0.16Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly34 ± 34 of 4

Looking for CG11391-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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