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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11397-RA through 18771 annotations produced 1 hits



gluon (glu):

Annotation Number : CG11397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015391
Gbrowse : chr2L:16733616-16738372 (-) // 100.0 //
Probeset : 1635123_at
Accessions : protein= NP_723996;, nucleotide= NM_165180;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0000796 // condensin complex // inferred from sequence or structu
Interpro : "0000166 // nucleotide binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred
FlyMine data for FBgn0015391.
Homophila reports that CG11397 is a close match (2e-23) to human gene BAM;CDLS3;CSPG6;HCAP;SMC3 (NP_005436), a gene associated with Cornelia de Lange syndrome 3, 610759 (3).
BioGrid reports that CG11397 interacts with CG1968 CG32635 .
TRiP has 2 RNAi stocks for FBgn0015391 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.30Down
Head23 14 of 4 0.20Down
Eye14 43 of 4 0.14Down
Thoracicoabdominal ganglion36 14 of 4 0.30Down
Salivary gland37 44 of 4 0.34Down
Crop22 24 of 4 0.20Down
Midgut12 20 of 4 0.10Down
Tubule26 34 of 4 0.20Down
Hindgut17 12 of 4 0.20Down
Heart13 22 of 4 0.12Down
Fat body13 60 of 4 0.12Down
Ovary338 84 of 4 3.10Up
Testis41 14 of 4 0.40Down
Male accessory glands28 13 of 4 0.30Down
Virgin spermatheca29 20 of 4 0.27Down
Mated spermatheca23 21 of 4 0.22Down
Adult carcass26 30 of 4 0.20Down
Larval CNS274 214 of 4 2.52Up
Larval Salivary gland50 34 of 4 0.46Down
Larval midgut15 20 of 4 0.14Down
Larval tubule24 34 of 4 0.20Down
Larval hindgut28 24 of 4 0.26Down
Larval fat body19 31 of 4 0.20Down
Larval trachea73 104 of 4 0.68Down
Larval carcass43 44 of 4 0.40Down
S2 cells (growing)236 64 of 4 2.17Up
Whole fly108 114 of 4

Looking for CG11397-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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