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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11398-RA through 18771 annotations produced 1 hits



(CG11398):

Annotation Number : CG11398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040366
Gbrowse : chrX:1107553-1109164 (-) // 100.0 //
Probeset : 1635368_at
Accessions : protein= NP_569896;, nucleotide= NM_130540;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0040366.
BDGP gene expression has embryonic in situ data for EG:BACR42I17.11: 4 pix of staining in 1 body parts.
Homophila reports that CG11398 is a close match (2e-13) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
TRiP has 1 RNAi stocks for FBgn0040366 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040366 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 24 of 4 0.50Down
Head22 24 of 4 0.40Down
Eye32 24 of 4 0.51Down
Thoracicoabdominal ganglion38 24 of 4 0.60Down
Salivary gland23 23 of 4 0.38Down
Crop35 24 of 4 0.60Down
Midgut16 14 of 4 0.30Down
Tubule13 03 of 4 0.20Down
Hindgut32 14 of 4 0.50Down
Heart27 24 of 4 0.44Down
Fat body25 74 of 4 0.40Down
Ovary163 54 of 4 2.60Up
Testis8 04 of 4 0.10Down
Male accessory glands8 21 of 4 0.10Down
Virgin spermatheca27 34 of 4 0.44Down
Mated spermatheca30 04 of 4 0.49Down
Adult carcass21 33 of 4 0.30Down
Larval CNS45 64 of 4 0.72Down
Larval Salivary gland17 14 of 4 0.28Down
Larval midgut18 14 of 4 0.29Down
Larval tubule24 04 of 4 0.40Down
Larval hindgut25 14 of 4 0.41Down
Larval fat body31 24 of 4 0.50Down
Larval trachea64 134 of 4 1.02None
Larval carcass21 34 of 4 0.35Down
S2 cells (growing)22 14 of 4 0.36Down
Whole fly63 44 of 4

Looking for CG11398-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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