FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG11398-RA through 18771 annotations produced 1 hits

(CG11398):

Annotation Number : CG11398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040366
Gbrowse : chrX:1107553-1109164 (-) // 100.0 //
Probeset : 1635368_at
Accessions : protein= NP_569896;, nucleotide= NM_130540;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0040366.
BDGP gene expression has embryonic in situ data for EG:BACR42I17.11: 4 pix of staining in 1 body parts.
Homophila reports that CG11398 is a close match (2e-13) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
TRiP has 1 RNAi stocks for FBgn0040366 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040366 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	33 ± 2	4 of 4	0.50	Down
Head	22 ± 2	4 of 4	0.40	Down
Eye	32 ± 2	4 of 4	0.51	Down
Thoracicoabdominal ganglion	38 ± 2	4 of 4	0.60	Down
Salivary gland	23 ± 2	3 of 4	0.38	Down
Crop	35 ± 2	4 of 4	0.60	Down
Midgut	16 ± 1	4 of 4	0.30	Down
Tubule	13 ± 0	3 of 4	0.20	Down
Hindgut	32 ± 1	4 of 4	0.50	Down
Heart	27 ± 2	4 of 4	0.44	Down
Fat body	25 ± 7	4 of 4	0.40	Down
Ovary	163 ± 5	4 of 4	2.60	Up
Testis	8 ± 0	4 of 4	0.10	Down
Male accessory glands	8 ± 2	1 of 4	0.10	Down
Virgin spermatheca	27 ± 3	4 of 4	0.44	Down
Mated spermatheca	30 ± 0	4 of 4	0.49	Down
Adult carcass	21 ± 3	3 of 4	0.30	Down
Larval CNS	45 ± 6	4 of 4	0.72	Down
Larval Salivary gland	17 ± 1	4 of 4	0.28	Down
Larval midgut	18 ± 1	4 of 4	0.29	Down
Larval tubule	24 ± 0	4 of 4	0.40	Down
Larval hindgut	25 ± 1	4 of 4	0.41	Down
Larval fat body	31 ± 2	4 of 4	0.50	Down
Larval trachea	64 ± 13	4 of 4	1.02	None
Larval carcass	21 ± 3	4 of 4	0.35	Down
S2 cells (growing)	22 ± 1	4 of 4	0.36	Down
Whole fly	63 ± 4	4 of 4

Looking for CG11398-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720