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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1140-RB through 18771 annotations produced 1 hits



citric acid synthetase (CG1140):

Annotation Number : CG1140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035298
Gbrowse : chr3L:1963142-1966808 (+) // 100.0 //
Probeset : 1629939_a_at
Accessions : protein= NP_647683; /// NP_728699;, nucleotide= NM_139426; /// NM_167928;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from seq
Interpro : 0008260 // 3-oxoacid CoA-transferase activity // inferred from sequence or structural similarity /// 0008260 // 3-oxoaci
FlyMine data for FBgn0035298.
BDGP gene expression has embryonic in situ data for CG1140: 16 pix of staining in 11 body parts.
Homophila reports that CG1140 is a close match (2e-174) to human gene OXCT1;OXCT;SCOT (NP_000427), a gene associated with Succinyl CoA:3-oxoacid CoA transferase deficiency, 245050 (3).
BioGrid reports that CG1140 interacts with CG13045 .
VDRC has 2 RNAi stocks for FBgn0035298 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 34 of 4 0.30Down
Head185 94 of 4 1.00None
Eye115 94 of 4 0.63Down
Thoracicoabdominal ganglion60 44 of 4 0.30Down
Salivary gland93 94 of 4 0.51Down
Crop152 74 of 4 0.80Down
Midgut172 44 of 4 0.90None
Tubule1729 1294 of 4 9.50Up
Hindgut496 194 of 4 2.70Up
Heart400 184 of 4 2.19Up
Fat body472 524 of 4 2.59Up
Ovary108 34 of 4 0.60Down
Testis24 24 of 4 0.10Down
Male accessory glands61 84 of 4 0.30Down
Virgin spermatheca373 34 of 4 2.05Up
Mated spermatheca204 144 of 4 1.12None
Adult carcass391 184 of 4 2.10Up
Larval CNS100 114 of 4 0.55Down
Larval Salivary gland190 84 of 4 1.04None
Larval midgut193 74 of 4 1.06None
Larval tubule266 454 of 4 1.50None
Larval hindgut758 504 of 4 4.16Up
Larval fat body43 44 of 4 0.20Down
Larval trachea187 154 of 4 1.03None
Larval carcass364 574 of 4 2.00None
S2 cells (growing)103 94 of 4 0.57Down
Whole fly182 64 of 4

Looking for CG1140-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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