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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11401-RA through 18771 annotations produced 1 hits



thioredoxin reductase 2 (Trxr-2):

Annotation Number : CG11401
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037170
Gbrowse : chr3L:22543325-22545122 (+) // 100.0 //
Probeset : 1631152_at
Accessions : protein= NP_524216;, nucleotide= NM_079492;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : "0004791 // thioredoxin-disulfide reductase activity // inferred from direct assay /// 0004791 // thioredoxin-disulfide
FlyMine data for FBgn0037170.
BDGP gene expression has embryonic in situ data for Trxr-2: 4 pix of staining in 1 body parts.
Homophila reports that CG11401 is a close match (1e-30) to human gene DLD;LAD;PHE3 (NP_000099), a gene associated with Leigh syndrome, 256000 (3);Maple syrup urine disease, type III, 248600 (3).
BioGrid reports that CG11401 interacts with CG31358 .
VDRC has 1 RNAi stocks for FBgn0037170 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head5 10 of 4 0.10Down
Eye5 10 of 4 0.14Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland10 50 of 4 0.30Down
Crop5 10 of 4 0.20Down
Midgut10 20 of 4 0.30Down
Tubule5 00 of 4 0.20Down
Hindgut6 10 of 4 0.20Down
Heart2 00 of 4 0.07Down
Fat body11 20 of 4 0.32Down
Ovary1 00 of 4 0.00Down
Testis465 234 of 413.20Up
Male accessory glands11 10 of 4 0.30Down
Virgin spermatheca8 10 of 4 0.23Down
Mated spermatheca7 10 of 4 0.21Down
Adult carcass5 10 of 4 0.10Down
Larval CNS7 10 of 4 0.20Down
Larval Salivary gland7 20 of 4 0.20Down
Larval midgut9 10 of 4 0.26Down
Larval tubule6 10 of 4 0.20Down
Larval hindgut6 10 of 4 0.19Down
Larval fat body43 171 of 4 1.20None
Larval trachea8 21 of 4 0.25Down
Larval carcass5 10 of 4 0.15Down
S2 cells (growing)8 00 of 4 0.25Down
Whole fly35 34 of 4

Looking for CG11401-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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