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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11405-RA through 18771 annotations produced 1 hits



A3-3 (Atf3):

Annotation Number : CG11405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028550
Gbrowse : chrX:1136772-1145689 (-) // 100.0 //
Probeset : 1637792_at
Accessions : protein= NP_620473;, nucleotide= NM_138988;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // inferred from mutant
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0028550.
BioGrid reports that CG11405 interacts with CG2275 .
TRiP has 1 RNAi stocks for FBgn0028550 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 14 of 4 1.00None
Head224 94 of 4 1.70Up
Eye82 34 of 4 0.62Down
Thoracicoabdominal ganglion260 104 of 4 2.00Up
Salivary gland105 104 of 4 0.79None
Crop718 284 of 4 5.40Up
Midgut502 224 of 4 3.80Up
Tubule174 64 of 4 1.30Up
Hindgut720 114 of 4 5.40Up
Heart202 74 of 4 1.52Up
Fat body172 194 of 4 1.30Up
Ovary19 24 of 4 0.10Down
Testis16 14 of 4 0.10Down
Male accessory glands172 94 of 4 1.30Up
Virgin spermatheca466 534 of 4 3.50Up
Mated spermatheca507 414 of 4 3.80Up
Adult carcass205 104 of 4 1.50Up
Larval CNS164 184 of 4 1.24Up
Larval Salivary gland409 394 of 4 3.07Up
Larval midgut214 114 of 4 1.61Up
Larval tubule141 34 of 4 1.10None
Larval hindgut424 144 of 4 3.18Up
Larval fat body46 34 of 4 0.30Down
Larval trachea849 624 of 4 6.37Up
Larval carcass381 224 of 4 2.86Up
S2 cells (growing)39 14 of 4 0.29Down
Whole fly133 44 of 4

Looking for CG11405-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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