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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG11411-RA through 18771 annotations produced 1 hits



Nasrat (fs(1)N):

Annotation Number : CG11411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004650
Gbrowse : chrX:1216557-1223487 (+) // 100.0 //
Probeset : 1624058_at
Accessions : protein= NP_569901;, nucleotide= NM_130545;
Pathway : embryo // traceable author statement /// 0048477 // oogenesis // traceable author statement"
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred
FlyMine data for FBgn0004650.
BDGP gene expression has embryonic in situ data for fs(1)N: 8 pix of staining in 1 body parts.
BioGrid reports that CG11411 interacts with CG6705 .
VDRC has 3 RNAi stocks for FBgn0004650 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head4 01 of 4 0.00Down
Eye4 00 of 4 0.03Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland4 20 of 4 0.03Down
Crop3 10 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule11 61 of 4 0.10Down
Hindgut4 00 of 4 0.00Down
Heart3 11 of 4 0.03Down
Fat body8 21 of 4 0.06Down
Ovary510 64 of 4 3.90Up
Testis46 24 of 4 0.40Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca9 22 of 4 0.07Down
Mated spermatheca3 10 of 4 0.03Down
Adult carcass12 31 of 4 0.10Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland5 00 of 4 0.04Down
Larval midgut5 10 of 4 0.04Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut3 00 of 4 0.02Down
Larval fat body5 11 of 4 0.00Down
Larval trachea6 04 of 4 0.05Down
Larval carcass2 01 of 4 0.02Down
S2 cells (growing)4 11 of 4 0.03Down
Whole fly131 114 of 4

Looking for CG11411-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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